Sphingobacterium thalpophilum: NCTC11429_00577
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Entry
NCTC11429_00577 CDS
T06778
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
stha
Sphingobacterium thalpophilum
Pathway
stha03030
DNA replication
stha03410
Base excision repair
stha03420
Nucleotide excision repair
stha03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
stha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCTC11429_00577 (ligA)
03410 Base excision repair
NCTC11429_00577 (ligA)
03420 Nucleotide excision repair
NCTC11429_00577 (ligA)
03430 Mismatch repair
NCTC11429_00577 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
stha03032
]
NCTC11429_00577 (ligA)
03400 DNA repair and recombination proteins [BR:
stha03400
]
NCTC11429_00577 (ligA)
Enzymes [BR:
stha01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NCTC11429_00577 (ligA)
DNA replication proteins [BR:
stha03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NCTC11429_00577 (ligA)
DNA repair and recombination proteins [BR:
stha03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NCTC11429_00577 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NCTC11429_00577 (ligA)
MMR (mismatch excision repair)
DNA ligase
NCTC11429_00577 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NCTC11429_00577 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
BRCT_2
Nlig-Ia
HHH
PTCB-BRCT
Auto_anti-p27
5_3_exonuc
RNA_ligase
RNA_lig_T4_1
Motif
Other DBs
NCBI-ProteinID:
VTR30118
UniProt:
A0A4V6KNA0
LinkDB
All DBs
Position
1:627848..629872
Genome browser
AA seq
674 aa
AA seq
DB search
MSVMDIEKKIKDLTAELNHYNYQYYVLADSVISDYDFDLKLKELEALERQYPEFADPNSP
TQRVGGDITSRFQTEKHRWPMLSLGNTYSQEELHDFDQRIRRIIGDQFEYVCELKFDGLS
ISLTYENGRLSRAVTRGDGTQGDVVTNNVKTIRSIPIKLKDGDYPDQFEIRGEIFMHKSA
FLRLNKEREENGEQTYANPRNFASGTLKLQDSSEVAKRPLDCFLYFLYCDNRTNLFHDHW
NSLEHVKSWGFHVSEHTRKCSTLAEVYDFINYWDAQRYHLGYEIDGIVIKVNDYAQQEDL
GFTAKNPRWAISYKFKAERVETTLNSISYQVGRTGAVTPVANLQPVLLAGTTVKRASLHN
ANEIARLDLHQGDTVYVEKGGEIIPKIIGVNLEKRRPDSMAFAYPAVCPECSTPLIRQDG
EAVHYCPNETGCPPQIVGKMQHFIGRKMMDIEGMGDETVETFFKKGLLHNIVDIYGLKDH
QADLQQLERFGQKSIDNMLAGIEKSKEKPFEKVLFSLGIRHVGETIAKKLAQHFKNIDAL
AQASTEEIESVQDIGRRIAESVKEYLDNPIHQQQIASLRNYGLQFEVEEREILLASESLS
GKTFLISGVFADYSREELAALIESHGGKMLSSISAKLDFLVAGDKMGPSKLAKAEKLGIP
MINEKDLMDLIHSK
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atgtcggtgatggatattgaaaaaaagataaaagacttaacggcggaactcaaccattat
aactatcaatactatgtattggcggatagtgttatttcggattatgacttcgacctcaaa
ttaaaagagcttgaagccctggagcgtcaataccctgagtttgccgacccaaactcgccc
acacaacgtgtaggcggagacatcacatcccgattccaaacggagaaacatcgctggccg
atgctttccttgggtaatacctatagccaagaagaactccatgattttgatcagagaatc
cgcagaatcataggcgatcagtttgagtatgtctgtgagctaaaatttgatggtctttct
atcagcctgacctatgaaaatggcaggttaagccgtgccgtcacccgtggcgatggcacg
cagggcgacgtagtaaccaacaatgtgaagacgatccgctccattccgatcaagctcaaa
gacggtgactacccagatcagttcgagatcaggggtgagatttttatgcataaatctgcc
tttctaagactcaacaaagagcgagaagagaacggtgaacagacgtacgcgaatccgcgc
aattttgcttcgggcactttaaaactccaagattcttcggaagttgccaaaaggccgctt
gactgctttctttacttcctctattgtgacaatagaaccaatctgtttcacgaccactgg
aacagcctcgaacacgtgaaaagctggggttttcatgtgagcgaacatacacgaaaatgc
agtacactggcagaggtttatgattttatcaattactgggatgcccaacgctatcatttg
ggttatgagatcgacggaattgtgatcaaggtaaacgactatgcccaacaagaggatctg
ggctttaccgctaaaaaccccagatgggctatctcgtataaatttaaggctgaacgggtg
gagacaacgctgaattcgatcagctatcaggtgggccgcacaggagctgtaactccggtc
gcgaatctacagcccgtgctacttgctgggacgacggtcaaacgggcatctctgcacaac
gccaacgaaattgcacgtctggacttacatcagggcgatacggtctacgttgaaaaggga
ggtgaaattatccccaagatcatcggagtaaacttagagaaacggagaccggattccatg
gcttttgcctatccagcggtttgcccggagtgttccactccactgatcaggcaggatggc
gaagcggttcactactgtcccaatgagaccggatgtccgccgcagattgtaggcaagatg
cagcattttatcggccgaaaaatgatggacatcgaaggtatgggcgacgagacggtagaa
acattttttaaaaaaggcttattacataatattgtcgatatctatggtttaaaagatcat
caggctgatttacagcagctggagcgctttggccagaaatcaatcgataatatgcttgcc
gggatcgaaaagtcgaaggaaaagcctttcgagaaagtactgttttcgctggggatacgt
catgtcggcgagacgattgccaaaaaattagcccagcattttaaaaatatagatgcgttg
gcccaggcatctacagaagaaatcgaaagcgttcaggacatcggccgccgtatcgcagag
agtgttaaagaatacctggacaaccccatccatcagcagcagattgccagtttaagaaat
tatggcttacagtttgaagtcgaggaaagggaaattctgttggcgagcgagagcctgagc
ggcaagacctttctgatttcaggtgtttttgccgattattccagagaggagctagcagca
ctgatcgaaagccatggaggaaaaatgctctcctccatttccgctaaattggattttctg
gttgccggagataaaatgggaccatcgaaacttgccaaggcagaaaaattgggcattcca
atgattaacgaaaaagatcttatggatcttattcattccaaataa
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