Streptomyces thermocarboxydus: AY578_23220
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Entry
AY578_23220 CDS
T11957
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sthc Streptomyces thermocarboxydus
Pathway
sthc03030
DNA replication
sthc03410
Base excision repair
sthc03420
Nucleotide excision repair
sthc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sthc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AY578_23220 (ligA)
03410 Base excision repair
AY578_23220 (ligA)
03420 Nucleotide excision repair
AY578_23220 (ligA)
03430 Mismatch repair
AY578_23220 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sthc03032
]
AY578_23220 (ligA)
03400 DNA repair and recombination proteins [BR:
sthc03400
]
AY578_23220 (ligA)
Enzymes [BR:
sthc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AY578_23220 (ligA)
DNA replication proteins [BR:
sthc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AY578_23220 (ligA)
DNA repair and recombination proteins [BR:
sthc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AY578_23220 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AY578_23220 (ligA)
MMR (mismatch excision repair)
DNA ligase
AY578_23220 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AY578_23220 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
HHH
PGRL1_N
PX
Zn_ribbon_TFIIB
DUF8512
Zn_ribbon_CLPX_N
Motif
Other DBs
NCBI-ProteinID:
UVT11929
LinkDB
All DBs
Position
5027144..5029339
Genome browser
AA seq
731 aa
AA seq
DB search
MAGDKQAETTSVPAQARERHATLAEQIEEHRFRYYVKDAPVISDAEFDRLLRELEQLEER
YPELRTPESPTQKVAGSYETEFTSVEHRSRMLSLDNTFNDEDLAAWADRIHRELGDQPYH
FLCELKVDGLAVNLTYERGRLVRAATRGDGRTGEDITPNVRTIAEIPDRLKGDKVPDVVE
VRGEVYFPMEKFQELNARLVEAGEKPFANPRNAAAGSLRQKDPRVTAARPLHMVVHGIGV
LEGYEGLTRLSQAYELLKQWGLPTSPHNRVVDDLEGVREFIAYYGENRHSVEHEIDGVVV
KLDEIPLQGRLGTTSRAPRWAIAYKYAPEEVNTKLLNIRVGVGRTGRVTPYAQVEPVTVA
GSEVEFATLHNQDVVKAKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGSEREFVMPSECP
ECGTPLRPMKEGDVDLRCPNARTCPAQLRERLFYLAGRKALDIEHFGYVAATALTSPLEP
EEPPLKDEGDLFDLTVEQLLPIKAYVLDQDSGLPKRDPKTGEEKVVTVFANQQGEPKKNA
LAMLRNIEAAKDRPLARVLTALSIRHVGPVAAEALAREFRSMDRIEQATEEELSATEGVG
PTIAASLKEWFAVDWHREIIRKWKAAGVRMEDERSGEDEGPRPLEGLTVVVTGTLENFTR
DGAKEALQNRGAKVTGSVSKKTSFVVVGDNPGSKYDKAVQLKVPVLNEDGFQVLLEQGPD
AAAEVALSAEE
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
gtggccggcgacaagcaagcggagacgacgagcgtgcccgcacaagcgcgggagcggcac
gccacgctcgccgagcagatcgaggagcaccgcttccggtactacgtgaaggacgccccc
gtcatcagcgacgcggagttcgaccgcctgctgcgcgagctggagcagctggaggagcgc
tacccggagctgcgcacgccggagtcgccgacccagaaggtcgccgggtcctacgagacg
gagttcacctccgtcgagcaccgctcccggatgctctccctggacaacacgttcaacgac
gaggacctcgccgcctgggcggaccgcatccaccgcgaactgggcgaccagccctaccac
ttcctgtgcgagctgaaggtcgacggcctggcggtcaacctcacctacgagcgcggccgg
ctggtgcgcgcggcgacccgcggcgacggccgcacgggtgaggacatcacgcccaacgtc
cgcaccatcgccgagatcccggaccgcctcaagggcgacaaggtgcccgacgtcgtggag
gtccgcggcgaggtctacttcccgatggagaagttccaggagctcaacgcccgcctggtg
gaggccggcgagaagccgttcgccaacccgcgcaacgcggccgccggttcgctgcgccag
aaggacccgcgggtcaccgccgcccgcccgctgcacatggtggtgcacggcatcggcgtg
ctcgagggctacgagggcctgacccggctctcccaggcctacgaactgctgaagcagtgg
ggcctgccgacctccccgcacaaccgggtggtcgacgacctggagggcgtgcgggagttc
atcgcctactacggcgagaaccgtcactccgtggagcacgagatcgacggcgtcgtcgtc
aagctggacgagatccccctccagggccgcctcggcaccacctcgcgcgccccgcgctgg
gccatcgcgtacaagtacgcgccggaggaggtcaacaccaagctgctgaacatccgcgtg
ggcgtcggccgcaccggccgtgtcacgccgtacgcgcaggtcgagccggtgaccgtggcc
ggctcggaggtcgagttcgccacgctgcacaaccaggacgtggtgaaggccaagggcgtc
ctgatcggcgacacggtggtgctgcgcaaggccggcgacgtcatcccggagatcctcggc
ccggtggtggacctgcgggacggcagcgagcgcgagttcgtgatgccgtccgagtgcccc
gagtgcggtacgccgctccggccgatgaaggagggcgacgtcgacctgcgctgccccaac
gcccgcacctgcccggcccagttgcgcgagcggctgttctacctggccggccgcaaggcg
ctggacatcgagcacttcgggtacgtcgccgccaccgccctcaccagcccgctggagccc
gaggagccgccgctgaaggacgagggcgacctgttcgacctcaccgtcgagcagctgctg
cccatcaaggcgtacgtcctcgaccaggacagcggactgcccaagcgggacccgaagacc
ggcgaggagaaggtcgtcaccgtcttcgccaaccagcagggcgagccgaagaagaacgcc
ctggcgatgctgaggaacatcgaggccgccaaggaccgcccgctggcccgggtgctcacc
gccctgtcgatccgtcatgtcgggccggtcgcggcggaggcgctggcccgtgagttccgc
tccatggaccgcatcgagcaggccaccgaggaggagctgtccgccaccgagggcgtcggc
ccgaccatcgccgcctccctcaaggaatggttcgccgtggactggcaccgggagatcatc
cgcaagtggaaggcggccggagtccgcatggaggacgagcgctccggcgaggacgagggc
ccgcgcccgctcgaaggactcacggtcgtggtgaccgggacactggagaacttcacccgg
gatggcgcgaaagaggccctgcagaaccggggcgcgaaggtgaccggatcggtctccaag
aagacgtcgttcgtcgtcgtgggcgacaacccaggatcaaagtatgacaaagcggtgcag
ttgaaggtgccggttctgaacgaggacggtttccaggtgctgttggagcagggacccgac
gccgcggccgaagtcgccctttcggccgaggagtag
DBGET
integrated database retrieval system
