Streptomyces sp. HU2014: M1P56_27105
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Entry
M1P56_27105 CDS
T11358
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sthu Streptomyces sp. HU2014
Pathway
sthu03030
DNA replication
sthu03410
Base excision repair
sthu03420
Nucleotide excision repair
sthu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sthu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
M1P56_27105 (ligA)
03410 Base excision repair
M1P56_27105 (ligA)
03420 Nucleotide excision repair
M1P56_27105 (ligA)
03430 Mismatch repair
M1P56_27105 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sthu03032
]
M1P56_27105 (ligA)
03400 DNA repair and recombination proteins [BR:
sthu03400
]
M1P56_27105 (ligA)
Enzymes [BR:
sthu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
M1P56_27105 (ligA)
DNA replication proteins [BR:
sthu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
M1P56_27105 (ligA)
DNA repair and recombination proteins [BR:
sthu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
M1P56_27105 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
M1P56_27105 (ligA)
MMR (mismatch excision repair)
DNA ligase
M1P56_27105 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
M1P56_27105 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
UQI47744
LinkDB
All DBs
Position
complement(6481597..6483840)
Genome browser
AA seq
747 aa
AA seq
DB search
MEQREDETVAGGQHGDEKLAAEAALAGAPAEVREQHARLAEQIEEHRFRYYVKDAPVVSD
AEFDQLLRSLEALEEEYPQLRTPDSPTQKVAGAYETEFTAVEHRERMLSLDNAFDDEELT
AWAERVAKDVGEGSAYHFLCELKVDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTI
AEIPDRLQGDRIPELVEIRGEVYFPMEKFEALNASLVEAGKPPFANPRNAAAGSLRQKDP
RVTATRPLHMVVHGVGAREGFAIERQSQAYDLLREWGLPTAAHNRVVASLAEVREFIAHY
GDPEVRHSMEHEIDGVVVKLDEIPLQGRLGSTSRAPRWAIAWKYAPEEVNTKLVDIRVGV
GRTGRVTPYAVVEPVTVAGSEVEFATLHNQEVVKAKGVFIGDTVVLRKAGDVIPEILGPV
AELRDGTEREFVMPAECPECGEALRPMKEGDIDLRCPNARACPAQIRERLFYLAGRQCLD
IENLGYVAATALTQPLEPAEPPLRDEGDLFGMTIEQLLPIKSHVVDPDSGLPKRDPKTGE
EKVVTFFANQKGEPKKNALAMLENIQAARRRPLARIINGLSIRHVGPVSAAVLAREFRSV
DRIAEASEEELAAVEGVGPIVAAAVKEWFAEDWHREIIEKWRAAGVRMEEEAAADEGPRP
LAGLTVVVTGTLASHTRDGAKEALQSQGAKVTGSVSKKTDFVVVGDNPGSKFDKAMALKV
PVLEEDGFAVLLTEGPEAAREAAVAQP
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
atggaacaacgggaggacgagacggtggctggcggacagcacggcgacgagaagctcgcg
gcggaggccgcgcttgccggagcacccgcggaggtgcgggagcagcacgcgcggctcgcc
gagcagatcgaggagcaccgcttccggtactacgtcaaggacgccccggtcgtcagcgac
gccgagttcgaccagctgctgcgctccctggaggcgctggaggaggagtacccgcagctg
cgcaccccggactcgcccacccagaaggtcgcgggggcgtacgagacggagttcacggcg
gtcgagcaccgcgagcgcatgctctccctcgacaacgccttcgacgacgaggagctcacc
gcctgggccgagcgcgtcgccaaggacgtcggcgagggctccgcgtaccacttcctgtgc
gagctgaaggtcgacggcctcgccgtcaacctgacctacgagcacggccggctcacccgc
gccgccacccggggcgacggccgcaccggcgaggacatcacgcccaacgtccggacgatc
gccgagatcccggaccggctccagggcgaccggatcccggagctcgtcgagatccgcggc
gaggtctacttcccgatggagaagttcgaggcgctcaacgcctccctggtggaggccggc
aagccccccttcgccaacccgcggaacgcggcggccggttcgctccgccagaaggacccc
agggtcaccgccacccgccccctgcacatggtggtgcacggcgtcggcgcccgcgagggc
ttcgccatcgagcgccagtcgcaggcctacgacctgctccgcgagtggggcctgccgacc
gccgcgcacaaccgcgtcgtggcctccctggcggaggtgcgggagttcatcgcccactac
ggcgaccccgaggtccggcactccatggagcacgagatcgacggcgtcgtcgtcaagctc
gacgagatccccctccaggggcgcctcggctccacctcccgcgccccccgctgggccatc
gcctggaagtacgccccggaggaggtcaacaccaagctggtcgacatccgcgtgggtgtc
ggccgtaccggtcgcgtcacgccgtacgcggtggtggagccggtcacggtcgcgggctcc
gaggtcgagttcgccaccctgcacaaccaggaggtcgtcaaggccaagggcgtcttcatc
ggggacaccgtcgtgctgcgcaaggcgggcgacgtcatccccgagatcctgggcccggtg
gccgagctgcgcgacggcaccgagcgggagttcgtgatgcccgccgagtgccccgagtgc
ggcgaggccctgcggcccatgaaggagggcgacatcgacctccgctgccccaacgcccgc
gcctgccccgcccagatccgcgagcgcctcttctacctcgccggccgccagtgcctcgac
atcgagaacctcggatacgtggccgccacggcgctcacccagccgctggagcccgccgag
ccgcccctgcgggacgagggcgacctgttcggcatgaccatcgaacagctgctgcccatc
aagtcccacgtcgtggacccggactccggcctgcccaagcgcgacccgaagacgggggag
gagaaggtcgtcaccttcttcgccaaccagaagggtgagccgaagaagaacgccctggcc
atgctggagaacatccaggcggccaggcggcgtcctctcgcccggatcatcaacggtctg
tccatccggcacgtgggcccggtgtcggccgccgtcctcgcccgcgagttccgctccgtc
gaccgcatcgccgaggcgagcgaggaggagctggccgccgtcgaaggcgtcggcccgatc
gtcgcggccgccgtcaaggagtggttcgccgaggactggcaccgcgagatcatcgagaag
tggcgcgccgccggcgtccggatggaggaggaggccgcggcggacgagggcccgcgcccc
ctcgccggcctcaccgtcgtcgtcaccggcacgctcgcctcgcacacccgcgacggcgcc
aaggaggccctccagagccagggcgccaaggtgaccggctcggtgtccaagaagacggac
ttcgtggtcgtcggcgacaaccccggctcgaagttcgacaaggcgatggcgctgaaggtc
ccggtcctggaggaggacggcttcgccgtgctcctcacggaggggcccgaggcggcgcgc
gaggcggccgtggcccagccgtga
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