Sphaerobacter thermophilus: Sthe_0939
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Entry
Sthe_0939 CDS
T01128
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sti
Sphaerobacter thermophilus
Pathway
sti03030
DNA replication
sti03410
Base excision repair
sti03420
Nucleotide excision repair
sti03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sti00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Sthe_0939
03410 Base excision repair
Sthe_0939
03420 Nucleotide excision repair
Sthe_0939
03430 Mismatch repair
Sthe_0939
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sti03032
]
Sthe_0939
03400 DNA repair and recombination proteins [BR:
sti03400
]
Sthe_0939
Enzymes [BR:
sti01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Sthe_0939
DNA replication proteins [BR:
sti03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Sthe_0939
DNA repair and recombination proteins [BR:
sti03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Sthe_0939
NER (nucleotide excision repair)
GGR (global genome repair) factors
Sthe_0939
MMR (mismatch excision repair)
DNA ligase
Sthe_0939
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Sthe_0939
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
Zn_ribbon_NUD
RNA_ligase
RUBY_RBDX
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
ACZ38376
UniProt:
D1C2A9
LinkDB
All DBs
Position
1:complement(1035274..1037316)
Genome browser
AA seq
680 aa
AA seq
DB search
MDDVDVQERIAELRKLIERYNYEYYVLDQPSVSDAEYDALMNELRELEAAHPELITPDSP
TQRVGAPPSSAFGTVRHEIPMLSLANAFSEQELRQWAERVYRLAGRRDIEFVTEPKIDGS
AVSILYRNGVYERGATRGDGIQGEDVTANIRTVRNVPLRLHDVDGVHVPEVLEVRGEIYM
RKSDFEALNRRRGEAGEILFANPRNAAAGSLRQLDPNVTASRPLRFYAWDVGIIEGGQHN
GTHTANLDLLRTLGIPTAPDYHVWQTIDEVWAECERWLSLRDELDFEIDGVVVKVNDEDL
QAELGTVSREPRWAIAYKFPAIQKTTILRDIEVNVGRTGSLNPVAILDPVEIGGVVVRRA
TLHNEDEIRRLDLLIGDRVVVQRSGDVIPKIVAVVVSARDGDERPFTMPDHCPVCGAAAV
RLEGEVMRYCVNASCPARLREAVRHFVSRGAMDIEGFGSRLAEQFVDLGLIHSVADIYEL
DWERIRQLEGFGDKRIANLQASIEASKERPLSRLLHALGIRHVGERNARLLAQHFNSMDR
IAAASIEELQGIPGFGRVVAEAVYDFFREPQNLALIQRLRAHGLRMTEADGDTAPVDGRL
AGKTVVLTGRLESMTREQAQEALRRMGATVTSSVSRKTDFVIVGQDPGSKADRARELGVQ
ILDEQAFLALLNGATDEDPS
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atggacgacgtggacgtccaggagcggatcgcggagctgcggaagctcatcgagcgctac
aactacgagtactacgtcctcgatcaaccatcggtgagcgatgccgagtacgacgcgctg
atgaacgagctgcgcgagttggaggcagcgcatccggagctaatcaccccggactccccc
acgcagcgcgtcggcgcaccgccctcctcagccttcggcaccgtccgccatgagatcccg
atgctcagccttgccaacgccttcagtgagcaggaactgcgccagtgggccgagcgggtc
taccggctcgccgggcgccgggacatcgagttcgtgaccgaaccgaagatcgacggcagc
gccgtctccatcctctaccggaacggcgtctacgagcggggagcaactcgtggcgacggc
atccagggcgaggacgtcaccgccaacattcgcaccgtccgcaacgtcccgctgcgtctc
cacgatgtcgacggcgtccacgtccccgaagtgctcgaggtgcgcggcgagatctacatg
cgcaagagcgacttcgaggcgctcaaccgccgccgcggagaggccggcgaaattctcttc
gccaacccgcgcaacgccgcagccggctcgctgcgccagctcgacccgaacgtgaccgcc
tcccgcccactgcgcttctacgcctgggacgtcggcatcatcgagggtggccagcacaac
ggcacccacacggccaacctcgacctgctccgcaccctcggcatcccgaccgcgcccgac
tatcacgtgtggcagacgatcgacgaggtctgggcagagtgtgagcggtggctgagcctt
cgggacgagctcgacttcgagatcgacggcgtcgtggtcaaggtcaacgacgaggatctc
caggccgaactcggaaccgtgtcccgcgagccgcgctgggccattgcgtacaagttccct
gcaatccagaagacgaccatcctgcgcgacatcgaagtcaacgtcggccgcaccggcagc
ctgaacccggtggcaatcctcgacccggtcgagatcggcggcgtggtcgtccgacgcgcc
accctgcacaacgaggacgaaatccggcggctcgatctcttgatcggcgacagggtcgtc
gtccagcgctcaggtgacgtcatccccaagatcgtggccgtcgtggtctcggcgcgcgac
ggcgacgagcgtcccttcaccatgccggaccactgcccggtctgcggcgcggcggccgtc
cggctcgaaggggaagtgatgcgctactgcgtgaacgcttcctgccccgcccggctgcgc
gaggcggtgcggcacttcgtctcacgcggtgcaatggacatcgaggggttcggcagccgt
ctggccgagcagttcgtcgacctcggtctgatccactccgtcgccgacatctacgaactc
gactgggagcggatccgacaactcgaaggcttcggtgacaagcgcatcgccaacctccag
gcctcgatcgaggcgagcaaggagcgcccactgtcgcgcctcctccacgccctcggcatc
cgccacgtcggtgagcgcaacgcccgcctgctggcccagcacttcaacagcatggaccgg
atcgccgccgcgtcgatcgaggagttgcagggcatccccggcttcggaagggtcgtcgcc
gaggccgtgtacgacttcttccgcgagccgcagaacctggcgctgatccagcgcctgcgc
gcccacggcctccgcatgaccgaggcagacggcgacaccgcgccggtcgacggccgcctc
gccggaaagacggtcgtcctcaccggtcggctcgagtccatgacgcgcgagcaggcgcag
gaggcgctgcgccgaatgggagccacggtcacgagttcggtgtcgcgtaagaccgacttt
gtcatcgtcggacaggatccggggagcaaggccgaccgcgcgcgggagctgggcgttcag
atccttgacgagcaggccttcctggcgctcctcaacggcgcgacggacgaagacccgagc
tag
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