Streptomyces sp. ICC4: DRB89_09305
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Entry
DRB89_09305 CDS
T10587
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
stic Streptomyces sp. ICC4
Pathway
stic03030
DNA replication
stic03410
Base excision repair
stic03420
Nucleotide excision repair
stic03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
stic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DRB89_09305
03410 Base excision repair
DRB89_09305
03420 Nucleotide excision repair
DRB89_09305
03430 Mismatch repair
DRB89_09305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
stic03032
]
DRB89_09305
03400 DNA repair and recombination proteins [BR:
stic03400
]
DRB89_09305
Enzymes [BR:
stic01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DRB89_09305
DNA replication proteins [BR:
stic03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DRB89_09305
DNA repair and recombination proteins [BR:
stic03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DRB89_09305
NER (nucleotide excision repair)
GGR (global genome repair) factors
DRB89_09305
MMR (mismatch excision repair)
DNA ligase
DRB89_09305
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DRB89_09305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
Nlig-Ia
RNA_lig_T4_1
ILEI
HHH
Motif
Other DBs
NCBI-ProteinID:
AWZ04813
LinkDB
All DBs
Position
2020099..2022309
Genome browser
AA seq
736 aa
AA seq
DB search
MAAEQKQGSDTAVPAAVREQHALLAEQVEEHRFRYYVNDQPVVSDAEFDKLLRSLEALEE
QYTELRTPDSPTQKVAGAYETDFASVEHRERMLSLDNAFDDEELAAWAERVARDANTSDY
HYLCELKVDGLAVNITYENGRLTRAATRGDGRTGEDITPNVRTIAEIPDRLKGDRIPALV
EIRGEVFFPMEKFEELNARLVEAEAKPFANPRNAAAGSLRQKDPKVTASRPLHMVVHGIG
AREGFEIERQSQAYELLHEWGLPTAQHNKVVSTLAEVREFIAEFGANRHSVEHEIDGVVV
KLDEIALQGRLGSTARAPRWAIAWKYAPEEVNSKLIDIKVGVGRTGRVTPYAQVEPVTVA
GSEVEFATLHNQEVVKAKGVLIGDTVVLRKAGDVIPEILGPVADLRDGSEREFVMPADCP
ECGTALRPMKEGDIDLRCPNARTCPAQLRERLFYLVGRACLDIKNFGYVASAALTQPLEP
SVPPMANEGDLFGLTLEQLLPITSYVRDQDSGLPKIDPKTGEPKIVTFFANKEGEPKANT
VAMLANIEAAKTQPLARIINGLSIRHVGPVAAAALARAFRSIERIEQATEEELAATDGVG
AIIATSVKEWFAEEWHQEILRKWRAAGVRMEEEGSGEEEGPRPLEGLTVVVTGTLQSHTR
DGAKEALQSLGAKVTGSVSKKTSFVVVGDNPGSKYDKAMQLKLHVLDDAGFAVLLAEGPE
AAREAALPVDGATEAE
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atggcagccgaacagaagcagggcagcgacacggccgtaccggcggcggtgcgcgagcag
cacgcgctgctcgccgagcaggtcgaggagcaccgcttccggtactacgtgaacgaccag
ccggtcgtcagcgacgccgagttcgacaagctgctgcgctccctggaggcgctggaggag
cagtacacggagctgcgcacgcccgattcgcccacccagaaggtggccggggcgtacgag
acggacttcgcctccgtcgagcaccgcgagcggatgctctccctcgacaacgccttcgac
gacgaggaactggcggcctgggcggagcgcgtggcccgggacgccaacacctccgactac
cactacctctgcgagctgaaggtggacggcctcgccgtcaacatcacgtacgagaacggc
cgcctgacccgcgccgccacccgcggcgacggccgcaccggcgaggacatcacgcccaac
gtccgcaccatcgcggagatccccgaccggctgaagggcgaccggatcccggcgctggtc
gagatccgcggcgaggtcttcttcccgatggagaagttcgaggagctcaacgcccggctg
gtcgaggcggaggccaagcccttcgccaacccgcgcaacgcggcggccggttcgctgcgc
cagaaggacccgaaggtcaccgcgagccgcccgctgcacatggtggtccacggcatcggc
gcccgcgagggcttcgagatcgagcgccagtcgcaggcgtacgagctgctgcacgagtgg
gggctgccgaccgcgcagcacaacaaggtggtctccacgctcgccgaggtccgggagttc
atcgcggagttcggcgcgaaccggcactcggtggagcacgagatcgacggcgtcgtcgtc
aagctcgacgagatcgccctccagggccggctcgggtccaccgcgcgcgccccgcgctgg
gcgatcgcctggaagtacgcgcccgaagaggtcaactccaagctgatcgacatcaaggtc
ggcgtcggccgcaccgggcgcgtgaccccgtacgcgcaggtggagccggtgacggtggcg
ggctcggaggtcgagttcgcgacgctgcacaaccaggaggtcgtcaaggccaagggcgtg
ctcatcggggacaccgtcgtcctgcgcaaggcgggcgatgtcatccccgagatcctcggc
ccggtcgcggacctgcgggacggcagcgagcgggagttcgtcatgcccgccgactgcccc
gagtgcgggaccgcgctgcggccgatgaaggaaggcgacatcgacctgcgctgccccaac
gcgcggacgtgtcccgcccagttgcgcgagcggctgttctacctggtcggccgcgcctgc
ctggacatcaagaacttcgggtacgtcgcctcggcggcgctcacccagccgctggagccc
tcggtccccccgatggcgaacgagggcgacctcttcggcctcaccctggagcagctgctc
cccatcacctcctacgtgcgggaccaggactcgggtctgcccaagatcgacccgaagacc
ggcgagccgaagatcgtcaccttcttcgccaacaaggagggcgagcccaaggccaacacg
gtggccatgctggcgaacatcgaggcggccaagacccagccgctggcccgcatcatcaac
ggcctgtcgatccggcacgtcggcccggtcgcggccgcggcgctggcccgcgcgttccgc
tccatcgagcggatcgagcaggcgaccgaggaggagctggccgccaccgacggggtcggc
gcgatcatcgcgacctcggtcaaggagtggttcgccgaggaatggcaccaggagatcctg
cgcaagtggcgggcggccggtgtccggatggaggaggagggttccggcgaggaggagggc
ccgcgcccgctggaggggctgaccgtcgtcgtcaccggcactttgcagagccacacccgc
gacggggcgaaggaggccctgcagagcctcggcgccaaggtcaccggctccgtgtcgaag
aagacctccttcgtcgtggtcggcgacaaccccggttccaagtacgacaaagccatgcag
ctgaagctccacgtcctcgacgacgccgggttcgccgtcctgttggcagagggcccggag
gcggcccgcgaggccgcgctcccggtggacggcgccaccgaagcggaatga
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