Streptomyces tirandamycinicus: DDW44_21560
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Entry
DDW44_21560 CDS
T06843
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
stir
Streptomyces tirandamycinicus
Pathway
stir03030
DNA replication
stir03410
Base excision repair
stir03420
Nucleotide excision repair
stir03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
stir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DDW44_21560
03410 Base excision repair
DDW44_21560
03420 Nucleotide excision repair
DDW44_21560
03430 Mismatch repair
DDW44_21560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
stir03032
]
DDW44_21560
03400 DNA repair and recombination proteins [BR:
stir03400
]
DDW44_21560
Enzymes [BR:
stir01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DDW44_21560
DNA replication proteins [BR:
stir03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DDW44_21560
DNA repair and recombination proteins [BR:
stir03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DDW44_21560
NER (nucleotide excision repair)
GGR (global genome repair) factors
DDW44_21560
MMR (mismatch excision repair)
DNA ligase
DDW44_21560
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DDW44_21560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
HHH
Nlig-Ia
RNA_lig_T4_1
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
AWI33154
UniProt:
A0A2S1T391
LinkDB
All DBs
Position
4860827..4863010
Genome browser
AA seq
727 aa
AA seq
DB search
MAVEQQGPVPAEARDEHARLAEQVEEHRFRYYVKDQPVISDAEFDRLMRSLEALEEEHPE
LRTPDSPTQQVAVAYETEFTAVEHRERMLSLDNAFDEEELAAWADRIAKEVGTSAYRFLC
ELKVDGLAVNLTYEKGRLTRAATRGDGRTGEDITPNVRTIADIPVRLRGERVPDLVEIRG
EVYFPMEAFEELNARRVAAGEQPYANPRNSASGSLRQKDPKVTATLPLHMVVHGIGARDG
LEISRLSEAYELLHEWGLPTARHYKVVDSLEEVREFIAYYGEHRHSVEHEIDGVVVKLDE
IPLQGRLGSTSRAPRWAIAWKYPPEEVNTKLVDIRVGVGRTGRVTPYAQVEPVTVAGSEV
EFATLHNQDVVKAKGVLIGDTVVLRKAGDVIPEILGPVADLRDGSEREFVMPAECPECGT
ALRPMKEGDVDLRCPNARSCPAQLRERLFYLAGRKSLDVEAFGYVAAAALTKPLEPAEPP
LADEGDLFDLTVEQLLPIKAYVLDQDSGLPKRDPKTGEEKIVTVFANQQGEPKKNTLAML
ENIAAAKRRPLARILTGLSIRHVGPVAAEELAREFRSIERIEQASQEELAAVEGVGPTIA
ASVKQWFEEDWHREILRKWRAAGVRMEEEGSGEDEGPRPLEGLTVVVTGTLEKYTRDGAK
DALQSRGAKVTGSVSKKTSFVVVGDNPGSKYDKAMQLKVPVLDEDGFAVLLEQGPDAARE
AAAPIEE
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
gtggctgtcgaacagcaggggccggtgccggcggaggcgagggacgagcatgcccggctg
gccgagcaggtcgaggagcaccgcttccggtactacgtgaaggaccagccggtcatcagc
gacgccgagttcgaccggctgatgcggtccctggaggcgctggaggaggagcatccggag
ctgcgtacgcccgactcgccgacccagcaggtcgcggtcgcctacgagacggagttcacg
gccgtcgagcaccgcgagcggatgctctccctcgacaacgccttcgacgaggaggagctg
gcggcctgggcggaccggatcgccaaggaggtcggcacctccgcgtaccgcttcctgtgc
gagctgaaggtcgacggcctggcggtcaacctcacctacgagaagggccggctcacccgg
gccgcgaccaggggcgacggccgcaccggcgaggacatcacccccaacgtgcggacgatc
gcggacatcccggtccgcctgcggggcgagcgggtgcccgatctggtggagatccggggc
gaggtctacttccccatggaggccttcgaggagctcaacgcccgccgggtcgcggccggt
gagcagccctacgccaacccccgcaactccgcgtcgggttcgctgcggcagaaggacccc
aaggtcaccgcgaccctgccgctgcacatggtggtgcacgggatcggggcgcgcgacggc
ctggagatcagccggctgtcggaggcgtacgagctcctgcacgagtggggcctgccgacc
gcccggcactacaaggtggtggactccctcgaggaggtgcgggagttcatcgcgtactac
ggcgagcaccggcactccgtggagcacgagatcgacggggtggtcgtcaagctggacgag
atcccgctccagggccggctgggctcgacgtcgcgggcgccgcgctgggcgatcgcctgg
aagtacccgccggaggaggtcaacaccaagctggtcgacatccgcgtcggggtgggccgt
accggccgggtcacgccgtacgcgcaggtggagccggtgacggtggcgggctccgaggtc
gagttcgcgaccctgcacaaccaggacgtggtgaaggccaagggcgtcctgatcggtgac
accgtcgtgctgcgcaaggcgggtgacgtcatcccggagatcctcggcccggtggccgat
ctgcgggacggcagcgaacgggagttcgtcatgccggccgagtgcccggagtgcggtacg
gccctgcggccgatgaaggagggcgacgtcgatctgcgctgccccaacgcccgtagctgc
cccgcccagttgcgggaacggctgttctacctggcgggccgcaagtccctggacgtcgag
gcgttcggctatgtggccgcggcggccctgacgaagccgctggagcccgccgagccgccg
ctggccgacgagggcgacctgttcgacctgacggtcgagcagctgctgcccatcaaggcg
tatgtgctggaccaggacagcggactccccaagcgcgacccgaagaccggcgaggagaag
atcgtcaccgtcttcgccaatcagcagggcgagcccaagaagaacacgctggcgatgctg
gagaacatcgcggccgccaagcggcggccgctggcccgcatcctcaccggcctctccatc
cgccatgtgggccccgtcgccgccgaggaactggcccgtgagttccgttcgatcgagcgc
atcgaacaggcctcccaggaggagctcgcggccgtcgagggagtgggacccaccatcgcc
gcctcggtgaagcagtggttcgaggaggactggcaccgcgagatcctccgcaagtggcgt
gccgcgggcgtccggatggaggaggagggctccggcgaggacgaggggccgcgcccgctc
gaggggctcacggtcgtcgtcaccggaacgctcgagaagtacacgagagatggcgcaaaa
gacgcgctccagagccggggagcgaaagtgacgggttccgtttcgaagaagacctcattc
gtcgttgtgggtgacaaccccggatcgaagtacgacaaggccatgcaacttaaggtgccc
gtactggacgaggacggcttcgcggtcctgctcgagcagggcccggacgcggcccgcgag
gcggccgcaccgatcgaggagtag
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