Streptococcus parauberis: STP_0485
Help
Entry
STP_0485 CDS
T01504
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
stk
Streptococcus parauberis
Pathway
stk03030
DNA replication
stk03410
Base excision repair
stk03420
Nucleotide excision repair
stk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
stk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
STP_0485
03410 Base excision repair
STP_0485
03420 Nucleotide excision repair
STP_0485
03430 Mismatch repair
STP_0485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
stk03032
]
STP_0485
03400 DNA repair and recombination proteins [BR:
stk03400
]
STP_0485
Enzymes [BR:
stk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
STP_0485
DNA replication proteins [BR:
stk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
STP_0485
DNA repair and recombination proteins [BR:
stk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
STP_0485
NER (nucleotide excision repair)
GGR (global genome repair) factors
STP_0485
MMR (mismatch excision repair)
DNA ligase
STP_0485
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
STP_0485
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
5_3_exonuc
RTT107_BRCT_5
UPF0758_N
Relaxase_C
E1-E2_ATPase
RNA_ligase
Zn_ribbon_PF0610
Motif
Other DBs
NCBI-ProteinID:
AEF24933
LinkDB
All DBs
Position
517432..519396
Genome browser
AA seq
654 aa
AA seq
DB search
MEKRIKELTDLLNQYRLEYYTNDSPSVSDQDYDRLYHELVQLEEEYPEYALKDSPTQAVG
GLVLTGFEKYQHAYPLYSLQDAFSPEELYSFDRRVKAEFPSAEYVAELKIDGLSISLNYQ
EGKLVTGATRGDGSIGENITENIKRIKDIPHQLDQAIDITVRGEAYMSRKSFQQINLERQ
ENGETEFANPRNAAAGTLRQLDTSIVAKRELASFLYQEASPTDELSQELVLEKLDNLGFS
VNPRRLITQSMDEIWNFIQAIEIERDQLSYDIDGIVIKVNSLAMQEELGFTIKAPRWAVA
YKFPAEEKEAEIRSVDWTVGRTGVVTPTANLTPVKLAGTTVSRATLHNVDYIEHKDIRIG
DTVIVYKAGDIIPAVLRVVTDKRRDDSEPMPIPSLCPSCQSELIHFEDEVALRCINPLCP
NLIQRSLEHFASRNAMNISGLGPAIVEKLYSANLIHDVADIYKLNLEQLLALEGIKEKSA
EKLLTAITNSKKNSADKLLFGLGIRHVGAKASRILLEEFGDIESLVEANQEEISQIDGLG
TVIAKSLARYFEKAEAQLLLSELKSAGLNLSYLGKKIDKTAKLFGMTVVLTGKLEQLTRN
EAKAKLESLGAKVTSSVSKKTDLLVAGSDAGSKLDKASTLGIRIEDEDWLVNLS
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaacgaataaaagaattaacggatttattaaaccaataccgtctggaatactat
accaatgatagtccgagtgttagtgaccaagactacgataggctatatcatgagttggtt
caattagaagaagaatatcccgaatatgctttaaaagatagtccaacacaagcagtcggt
ggactagttttaacaggtttcgaaaaatatcaacacgcatatccgctctatagtttacag
gatgccttttcaccggaagagttgtactcatttgaccgacgagttaaagcagaatttcca
agtgctgagtatgtagcagaattgaaaatagatggcttatcaatttcccttaattatcaa
gaaggtaagttagtcacaggagcaacacgtggtgatggtagtattggtgaaaacattaca
gagaatatcaaacggattaaagatattcctcaccagttagatcaagcaattgatattact
gtccgtggtgaagcatatatgtcacggaaatctttccaacaaattaacttagaacggcaa
gaaaatggtgaaactgagtttgccaatccaaggaatgcggcagctggaacattacgtcag
ttagatacatcaattgttgctaagagagagttagcaagcttcctatatcaagaagctagc
cccacagatgaattaagtcaagagttagttctagaaaagttagacaacttaggcttctca
gttaacccacgtcgccttatcacgcaatctatggatgagatttggaactttattcaagca
attgaaattgaacgagaccaattatcttatgatattgacgggattgttattaaagtaaac
agtctagcaatgcaagaagagttgggctttaccatcaaagcaccaagatgggctgttgct
tataagtttccagctgaagaaaaagaagcagaaattcgatcagtcgattggacagtaggt
cgaacaggtgttgtaacgccaacagccaacttaacaccggttaaattggcagggacgaca
gtaagtcgagcaaccttgcataatgtcgattacatcgaacataaagatattcgaattgga
gatacagtaattgtctataaagcaggagatataatacctgcagttttacgggtcgttaca
gataaacgtcgagatgattctgaaccaatgccgattcccagtctatgtccgtcttgtcag
agtgaattgattcattttgaggatgaagtggccttaagatgtatcaatccactatgtcca
aatttaattcaaagaagtttagaacattttgctagccgaaatgcaatgaatatttctggc
ttgggtcccgcaattgtcgagaagctctattcagcaaacctaattcatgatgtagctgat
atttataaattaaatcttgaacaattattagctttagaaggtattaaagaaaagtctgcc
gaaaaattattaacagcgataactaattcaaagaaaaattcagctgataaactattgttt
ggtttaggaattcggcatgtcggtgctaaagccagccgtatattattggaagaatttggt
gatatcgaatcgctagttgaggccaaccaagaagaaataagtcagatagatggattaggc
acagtgattgccaaatccctcgctcgatactttgaaaaagccgaagcccaattattactg
tcagaattaaaaagtgctggattaaatctttcttatttaggtaagaaaattgataaaaca
gcaaaattgtttggtatgacagttgttttaacaggaaaactagaacaattgactaggaat
gaagccaaagcaaaattagaatctcttggggcaaaagttacctcaagtgtttcaaaaaaa
acagacctattagtcgctggaagtgatgctgggtcaaaattagacaaagccagtactctc
ggaattagaattgaggatgaagactggctagtgaatttgtcataa
DBGET
integrated database retrieval system
