Stomatobaculum sp. F0698: QU660_08295
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Entry
QU660_08295 CDS
T09252
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
stom
Stomatobaculum sp. F0698
Pathway
stom03030
DNA replication
stom03410
Base excision repair
stom03420
Nucleotide excision repair
stom03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
stom00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QU660_08295 (ligA)
03410 Base excision repair
QU660_08295 (ligA)
03420 Nucleotide excision repair
QU660_08295 (ligA)
03430 Mismatch repair
QU660_08295 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
stom03032
]
QU660_08295 (ligA)
03400 DNA repair and recombination proteins [BR:
stom03400
]
QU660_08295 (ligA)
Enzymes [BR:
stom01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QU660_08295 (ligA)
DNA replication proteins [BR:
stom03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QU660_08295 (ligA)
DNA repair and recombination proteins [BR:
stom03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QU660_08295 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QU660_08295 (ligA)
MMR (mismatch excision repair)
DNA ligase
QU660_08295 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QU660_08295 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
HHH_3
Lar_restr_allev
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
WLD87698
LinkDB
All DBs
Position
complement(1818872..1820809)
Genome browser
AA seq
645 aa
AA seq
DB search
MQALIDTLLPAARAYYQESREIMSNFDYDRAYDELKRLEEESGIVLSGSPTQSVGYEVLS
SLPKVTHEQPMLSLDKTKSVDELISWLGTQKALLSWKMDGLTIVLRYRDGELYQAVTRGN
GYIGELVTGTVRAFRNVPLRIPFKGELLLRGEALMRYSDFARINAELPETEAKYKNPRNL
CTGTVRQLDPAVTAARGVYFHAFSLVEAEGVEFNNSRAAQFAWLSDQGFEVVEYETVTAD
TLRDSVLRFEAKIPENDFPSDGLVLLLDDIAYGESLGRTAKFPRNAIAFKWQDEQAETVL
REIEWSPSRTGLINPVAIFDPVDLEGTEVRRASVHNVSVLRGLKLGIGDRIRVYKANMII
PQIAENLTKSGTAEPPAHCPVCGTETEIRKENDAETLYCVNPDCAIKRVKRFALMTSRDA
FHIEGLSETTLEKLIQEGFIHRYADLFHLKRAEADIAAMKGFGEASAAKLIEAAEKARSM
PLSRFVYGLGIPGVGVQNAKVLAKAFHGDFAALRAASAEALTEVDGIGEVMAADIVNFFA
DPREQEIIDELLKEVTLEPEASAGAASELYAGKVFVITGSLTQFPNRTALKDYITARGGK
VAGEVSAKTTALINNDITSGSSKNKKARELGIPIISEADFLAGLG
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atgcaggccctgattgataccctgcttccggcggcgcgcgcctactatcaggagagccgc
gagattatgagtaacttcgactacgaccgcgcctatgacgaattgaagcgcctcgaagag
gagagcggcattgtgctctcgggttccccgacgcagagcgtcggctatgaagtgctgtcc
tcgctccccaaggtaacccatgagcagcccatgctctcgctcgacaagaccaagagcgtg
gacgagttgatttcctggctcggaacgcagaaggcactgctctcttggaagatggacggc
ctcacgatagtactgcgctaccgggacggcgagctctatcaggcggtgacgcgcggcaac
ggctatatcggcgagcttgtgacaggaaccgtgcgggcgtttcgcaatgtgccgctccgc
atcccgttcaagggggaacttctgctccgcggcgaagccctgatgcgctactcggatttt
gcgcgcatcaatgcggaactgccggagacagaggcaaagtataagaacccgcggaacctc
tgcacgggcacggtgcgccagctggaccccgcggtgacggcggcgcgcggcgtttacttc
cacgccttctccttggtggaggcggagggtgtcgagttcaacaactcccgcgcggcgcag
tttgcgtggcttagcgaccagggctttgaggtggtcgaatacgagaccgtgaccgcggat
accctgcgggacagcgtgctccgttttgaagcgaagattccggagaacgacttcccctcg
gacggcctcgtgctcttgcttgatgacattgcgtacggcgagtcgctggggcgcacggca
aagtttccgcgaaacgcgattgccttcaagtggcaggatgagcaggcggagacagtgctc
cgcgaaatcgagtggagtccctcgcggacggggctcattaacccggttgcgatttttgac
ccggtggatcttgagggcaccgaagtgcggcgcgcaagcgtccacaatgtgagtgtgctc
cgcggcttaaaactcggcataggcgaccgcattcgggtctacaaggcaaatatgatcatt
ccgcagattgcggagaacctcaccaagagcggaacggccgagccgcccgcacactgtccg
gtctgcggcacggagacggagatacgcaaagagaacgatgcggaaaccctctactgtgtg
aacccggactgcgcgattaagcgcgtgaagcgctttgcgctgatgacgagccgcgacgcc
tttcacatcgagggactctcggagaccacgctcgaaaagctgattcaggagggtttcatc
caccgctatgcggatctctttcacttaaagcgtgcggaggcggatatcgctgcgatgaag
gggttcggcgaggcctccgcggcaaagctcatcgaggcggccgagaaggcgagaagcatg
cccttgtcccgctttgtctacggcctcggcattccgggtgtcggtgtacagaatgcgaag
gtgctcgcaaaagcctttcacggcgattttgcggcgcttcgcgcggcgagcgcggaagcg
ctcaccgaggtggacggcatcggcgaagtcatggcggcggatatcgtgaatttctttgcg
gatccgcgggagcaagagattatcgacgagctcctaaaggaagtgacgctggaacccgag
gcgagcgccggagcagcgtccgagctctacgccggaaaggtctttgtgattacgggaagc
ctcacacagttcccgaatcgcacggcgttaaaggactatatcacggcgcggggcggcaag
gtcgcgggggaggtctccgcaaagaccacggcgctcatcaataacgacattacttccggc
tcaagcaaaaacaaaaaggcgcgggaactcggcattccgatcatcagtgaggccgatttc
ctcgcaggattggggtaa
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