Sphaerospermopsis torques-reginae: K2F26_05970
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Entry
K2F26_05970 CDS
T09782
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
stoq
Sphaerospermopsis torques-reginae
Pathway
stoq03030
DNA replication
stoq03410
Base excision repair
stoq03420
Nucleotide excision repair
stoq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
stoq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K2F26_05970 (ligA)
03410 Base excision repair
K2F26_05970 (ligA)
03420 Nucleotide excision repair
K2F26_05970 (ligA)
03430 Mismatch repair
K2F26_05970 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
stoq03032
]
K2F26_05970 (ligA)
03400 DNA repair and recombination proteins [BR:
stoq03400
]
K2F26_05970 (ligA)
Enzymes [BR:
stoq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
K2F26_05970 (ligA)
DNA replication proteins [BR:
stoq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
K2F26_05970 (ligA)
DNA repair and recombination proteins [BR:
stoq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
K2F26_05970 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K2F26_05970 (ligA)
MMR (mismatch excision repair)
DNA ligase
K2F26_05970 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
K2F26_05970 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
BRCT_2
RNA_pol_A_CTD
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
QYX32892
UniProt:
A0ABX8X2I2
LinkDB
All DBs
Position
1298227..1300272
Genome browser
AA seq
681 aa
AA seq
DB search
MIQTHPEAKRVEELRRLLQQASYAYYVLDAPIMEDPVYDRLYRELQELETKYPELITPDS
PTQRVGERPTTHFTSVRHNIPLYSLENAFNVEELQNWDQRWQRHLPSQYSLVEVDYVAEL
KIDGAALALTYQNGILVRGATRGDGVMGEDITQNVRTIRSIPLRLNFDGLAEIEKVEVRG
EVFLPLEVFKQINEKRQKAGEQLFANPRNAVAGTLRQLDPRIVAQRQLDFFAYTLHIPGL
DDASIANTQWEALELLQKLGFRVDTNHKLCHSLSEVAEYYQYWDTERLNSPYMTDGVVVK
LNAFKLQEQLGFTQKFPRWAIALKYAAEEAPTRVENITVNVGRTGALTPLAEMRPVQLAG
TTVSRATLHNSDRIAQLDIRIGDTVIVRKAGEIIPEVVRVIKELRPADTEPFIMPTHCPV
CDQPVVRESGEAVTRCVNASCPAILKGEIEHWVSRDALDIKGMGEKLVHQLVDKSLIHSV
GDLYDLTEDKLCALERMGKKSAQKLISAIAQSKNQPWSRVLYGLGIRHVGSVNAQLLTEK
FTTVEKLAAAKQSDIEGVYGIGAEIAQSVSQWFRISANQTLISRLQAIGLQLANTETPKT
TNETNPNIAGKTFVVTGTLPNLKRDEAKALIQKAGGKVTDSVSKKTDFLVVGADAGSKLE
KAQSLGIKQLNEAQLLEMLKG
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgatccaaacccaccctgaagctaaacgtgtagaagaattgcgacgtttattacaacaa
gccagctatgcttactatgtactcgatgcaccaataatggaagatccggtttatgacaga
ctgtatcgagaattacaggaattagaaacgaaatatccagaattaatcactcctgatagt
cctactcagcgtgtgggtgaacgaccaacaactcattttacatcagtacggcataatata
cctctgtatagtttggaaaatgcttttaatgttgaagagttgcaaaattgggatcaacgt
tggcagcgacacttgccttctcagtattccctagtagaagtggactatgtagcagagttg
aaaattgatggtgcggctttggcgttgacttaccaaaatggtattctggtaagaggtgca
actaggggtgatggggtgatgggtgaagatattacccaaaatgtgcggactattcgctct
attcccttgcgtttgaattttgacggtttggcagaaattgaaaaggtggaagtacgggga
gaggtatttttacctttggaggtgtttaagcaaattaatgagaaaaggcaaaaagcaggt
gaacagttatttgctaatccgcgtaatgctgtagctggtacgctaagacagttagatccg
cgtattgttgcccaacgtcagttagatttcttcgcttatactctgcatattcccggtttg
gatgatgccagtattgctaatacccaatgggaagctttggaattgttgcaaaagttaggt
tttcgcgttgatactaatcataaactctgtcattctctcagtgaagttgcggaatattac
caatattgggacacagaaaggctcaattcaccctatatgacggatggggtggtggtaaaa
ttgaatgcttttaagctgcaagaacaactagggtttacacagaagtttccccgctgggcg
atcgctctcaaatatgcagcggaagaagcccctacccgtgtagaaaatattactgtcaat
gtaggcagaacgggagcattaacaccgttagcggaaatgcgcccagtacaattagcaggt
actactgtttctcgtgctacattacataatagcgatcgcattgcccaattagatatccgc
atcggtgataccgtcattgttcgcaaagctggggaaattatcccggaggtagtacgggta
ataaaagaactacgccccgcagataccgaaccttttattatgcctacccattgtcccgta
tgtgatcaaccggtggtgcgagaatcaggtgaagctgttactagatgtgtaaatgcttcc
tgtcctgccattctcaaaggagagattgaacattgggtaagtcgggatgctttagatatt
aaaggaatgggtgaaaaactggtacatcaactggtagataaaagtttaatccattctgtt
ggcgatttatacgacttgacagaagataagttatgtgcattagaaaggatgggtaaaaag
tcagcgcaaaaattaatcagtgcgatcgcccaatccaaaaatcaaccttggtccagggta
ttatacggtttaggtattcgtcacgtaggtagcgtcaacgcccaattattaaccgagaaa
tttaccacagtggaaaaattagccgctgcaaaacaatctgatatagaaggtgtttatggt
atcggtgcagaaattgcccaatcagtttctcagtggtttcgcatcagtgcaaatcaaact
ttaatttctcgtcttcaagccattgggttacaattagctaacaccgaaacaccgaaaaca
acaaatgaaactaatcccaatattgcaggtaaaacctttgtagttacaggtactttacct
aatttaaaacgggatgaagcaaaagcattaattcaaaaagctggtggtaaagtcactgac
tctgtgagtaaaaaaacagattttttagtggtaggtgctgatgcaggatctaaattagaa
aaagcccaatctttaggaattaaacagttaaatgaggcacagttgttagaaatgttaaag
gggtaa
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