Sphaerodactylus townsendi (Townsend's least gecko): 125434925
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Entry
125434925 CDS
T08213
Name
(RefSeq) TNF receptor-associated factor 6-like
KO
K03175
TNF receptor-associated factor 6 [EC:
2.3.2.27
]
Organism
stow
Sphaerodactylus townsendi (Townsend's least gecko)
Pathway
stow04010
MAPK signaling pathway
stow04120
Ubiquitin mediated proteolysis
stow04140
Autophagy - animal
stow04144
Endocytosis
stow04620
Toll-like receptor signaling pathway
stow04621
NOD-like receptor signaling pathway
stow04622
RIG-I-like receptor signaling pathway
stow05132
Salmonella infection
stow05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
stow00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
125434925
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
125434925
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
125434925
04140 Autophagy - animal
125434925
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
125434925
04621 NOD-like receptor signaling pathway
125434925
04622 RIG-I-like receptor signaling pathway
125434925
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
125434925
09171 Infectious disease: bacterial
05132 Salmonella infection
125434925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
stow04131
]
125434925
04121 Ubiquitin system [BR:
stow04121
]
125434925
Enzymes [BR:
stow01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
125434925
Membrane trafficking [BR:
stow04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
125434925
Ubiquitin system [BR:
stow04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
125434925
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
zf-TRAF
zf-C3HC4_2
zf-C3HC4
TRAF6_Z2
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-C3HC4_4
zf-TRAF_2
zf-RING_5
TRAF3_RING
Med21
SlyX
RING_XB3-XBAT31
Spc29
PspA_IM30
zf-rbx1
PUMA_CC
DUF4455
DUF16
GrpE
HMMR_N
DUF1664
TMF_DNA_bd
DUF7310
AAA_13
DUF7607
Motif
Other DBs
NCBI-GeneID:
125434925
NCBI-ProteinID:
XP_048356744
LinkDB
All DBs
Position
LG06:complement(11114510..11138393)
Genome browser
AA seq
548 aa
AA seq
DB search
MSLLHSNTCFDTSDQDGGCCAAMASACSSGAKEESVASNFSNGTGGTLSNSFIEEVQGYD
VEFDPPLESKYECPICLMALREAVQTRCGHRFCKACIVKSIRDAGQKCPIDNEILLENQL
FPDNFAKREILSLRVKCPNKGCDQKMELRQLEDHQLHCGFASEECSQCQGCFQKNQLQQH
IMLECPRRQVTCPNCIMSMAYEDKEVHDQKCPLANVCCEYCNTELIREQLLNHYDNDCPT
APVPCTYGAFGCPEKMQRNELARHVQEFTQVHMRMMAQALRSLTVSAPSPMSFVGGLTFD
PSPFSQALPAQCDCRPEVQNFKETIQQLEGRLVRQDHQIRELIAKMETQNTQVGNLKRTI
RNLEEKITEIEAQQCHGIFVWKIDNFSMYLKAQEEERPVVIHSPGFYTGKPGYKLCLRLH
IQSPNAQRCANYISLFVHTMQGEHDNHLPWPFQGTIRLSILDQSEDSPRHNHEEVMDTKP
ELLAFQRPTSYRNPKGFGYVTFMHLQSLKQRTYVKDNLLLVRCEVVTRLDLTSLRREGFQ
PRSTDGTV
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atgagtctactacatagtaacacctgctttgacaccagtgatcaagacggtggctgctgt
gcagccatggccagtgcctgcagctctggagccaaagaggagagtgtcgctagcaacttc
agcaatggcaccggtggaacgctttcaaactctttcatagaagaggttcagggctacgat
gttgagtttgatcccccgctggaaagtaaatacgaatgtcctatttgcttaatggctctg
cgagaagcagtacaaacacgatgtggacaccgtttctgcaaagcttgcattgtcaaatcc
ataagagatgccggtcagaaatgtccaatagataatgaaatcttactagaaaaccagctg
tttcctgacaactttgccaaacgtgaaattctctcattgagggtaaaatgccctaacaag
ggctgtgatcagaagatggaactaaggcaactagaggaccatcagctgcattgcgggttt
gcgtcagaagaatgttctcagtgccaaggctgtttccaaaagaatcagctacaacaacac
ataatgctagaatgtccaagacggcaagtcacttgtccaaactgtatcatgagcatggca
tacgaagataaagaggttcatgaccagaagtgccctttggcaaatgtatgctgtgaatac
tgcaacacggagctaatcagagagcagttgcttaatcactatgacaatgactgccctact
gctccagtaccatgtacttacggtgcttttggatgtccagaaaaaatgcagaggaatgag
ttggcacgccacgtgcaagagttcactcaggttcatatgagaatgatggcccaggctctc
cgaagcctcaccgtttctgctccatcccccatgtcttttgttggaggactgacttttgac
ccatcccctttctcccaagccttgccggcccagtgtgactgcagaccagaagtccagaac
ttcaaggagaccattcagcaactggaaggtcgcttggtcagacaagatcaccaaatccgt
gaactgattgctaagatggagacacagaacacacaggtggggaacctcaagcgcacaatt
cggaatctggaagaaaaaattactgaaatcgaagcgcagcagtgccatggtattttcgtc
tggaagattgacaacttcagcatgtatctaaaagcccaagaagaagaaaggcccgtggtt
atccacagcccaggcttctacacagggaaacctggttataagctttgtttgcggttgcac
attcagtcgccaaacgctcagcgctgcgctaactatatttccctttttgttcacactatg
caaggagaacatgacaatcacctgccttggccgttccaaggaaccatacggctttctatt
ctggaccagtcagaagattctccaaggcacaaccatgaagaagtgatggataccaaacct
gagctcttagccttccagcgcccaacatcctatcgcaacccaaagggatttggatatgtg
actttcatgcacttgcagtcactaaagcaaagaacttacgtgaaagacaatcttcttttg
gttcgctgcgaggttgtgacgcgcttggacttaaccagtctccgaagagaaggttttcag
ccccggagtactgatgggactgtgtag
DBGET
integrated database retrieval system
