Sphaerodactylus townsendi (Townsend's least gecko): 125436065
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Entry
125436065 CDS
T08213
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
stow
Sphaerodactylus townsendi (Townsend's least gecko)
Pathway
stow03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
stow00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
125436065 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
stow03400
]
125436065 (LIG4)
Enzymes [BR:
stow01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
125436065 (LIG4)
DNA repair and recombination proteins [BR:
stow03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
125436065 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
BRCT_2
DNA_ligase_A_C
RNA_ligase
LIG3_BRCT
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
125436065
NCBI-ProteinID:
XP_048358612
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All DBs
Position
LG01:complement(192308970..192314862)
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AA seq
913 aa
AA seq
DB search
MSSIPASHSSSSQVTVASQVPFADLCSVLELIQKCKSRPEKTKYFKDFLDSWRKFHDALH
KDEKDVTDSFYPALRLILPQLERERMAYGIKETMLAKLYIELLNLPKEGKDALKLLDYRT
PAGSRGDAGDFATTAYFVLKPRCIKPGQLTIRQVNDLLDSISINNAAKRKDLVKKSLLQL
ITQSSALEQKWLIRMIIKDLKLGISQQTLFSIFHPDSAELYSVTTDLEKVCRQLHDPSAS
LSDVSISLFSAFKPMLAAIANIPQIEKQMNHQSFYIETKLDGERIQMHKDGDVYKYFSRN
GYDYTQQFGASPLEGSLTPFIHNVFRKNVQNCILDGEMMAYNPTTQNFMQKGNKFDIKRM
VDDSELQTCFCVFDVLMVNSQKLGHEMLSKRYEILNNIFTPITGRIQVILKHQASTQKEV
IDALNEAIDNREEGIVVKDPTSVYKPDKRGEGWLKIKPEYVSGLMDELDLLIVGGYWGKG
LRGGMMSHFLCAVAEMPSPGEKPSVFHSICRVGSGYTMKELYDLSLKLANHWKPYRKKNP
PCNILCGTEKPEVYIEPCNSVIVQVKAAEIISSDMYKTDCTLRFPRIEKIREDKKWSECM
TLDLLEQLRGKASGKLATKHLDIGHNAPQGKKRKTMPKVKQFIGVMDTFKAPDLSNVSRL
SSIFEDVEFCVMTGTENCPKNELESKIAEFGGSIVQNPGPDTYCVVVGTENIRVKNIISS
SKHDVVKAEWLLQCFERQAFMPWQPIFMIQMSSETKQYFACKYDCYGDSYTADTDVAQLK
ELFSRMNNLKEKISWDVIADTEERYSWNCSPFNIFRQHTVYIGISDEAGSLRDKVNRTSL
LTSALMLRFHGARVTSQLEEGVSHVIIGEDRGRVKEIKAVRRTFRRKFKIVSEQWVKDSL
KAGKLQNEDVYLI
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atgtcttccatccctgcttcacactcttcttcttctcaggtgactgtggcgtcacaagtc
ccttttgcagacctctgttcagttctagaactaatacagaaatgtaaatctcggccagag
aaaacgaagtacttcaaagattttttagattcctggagaaaatttcatgatgctcttcat
aaagatgaaaaggacgtgacagattctttttatcccgccctgagacttattcttccacag
ctggaaagagagaggatggcttacggcattaaagaaactatgctggccaagctctatatt
gaactgctaaatttacccaaggagggaaaagatgctttaaaacttttagattatcgaaca
cctgctggctcacggggagatgctggagattttgctacgacggcctattttgtgctgaag
ccaagatgcatcaagccaggtcagctgaccatacgacaagtaaatgatctcctagattca
atttctatcaataacgctgctaagcggaaggatttggtcaagaagtctcttctgcagtta
ataacgcagagctccgcactggagcagaagtggctgatcagaatgatcataaaggatttg
aaactgggcatcagccaacaaacgttgttttccatcttccatcccgattctgcagagttg
tacagtgtcacaaccgacctagagaaagtttgcaggcaactgcatgatccctctgcatcc
cttagcgatgtttccatttcgctgttttctgcctttaagccaatgcttgcagcaattgcc
aacataccacagattgaaaaacaaatgaaccatcaaagtttctacattgaaaccaagttg
gatggtgaacgaatacagatgcacaaagatggcgatgtgtacaagtatttctcacgaaat
ggatatgattatactcagcagtttggggcatcccccctcgaaggttccttgacaccgttc
atccataacgtttttcgaaagaatgttcagaactgcattctggatggtgaaatgatggcc
tacaatcccacaacacaaaacttcatgcagaagggaaacaaatttgacatcaagagaatg
gtggatgattctgaattgcaaacatgtttctgtgtgtttgatgttctaatggtgaacagc
cagaagttgggtcatgagatgctgagcaaaagatatgagatactgaataatatttttacc
ccaataacaggtcgaatacaggtcattcttaaacatcaagctagcacccagaaagaagtt
atagatgctctaaatgaagcaatagataatagagaagaaggaattgtggtcaaagacccc
acatcagtttacaagccagataaacgcggagaaggatggctgaagataaaaccagagtat
gtcagcgggctgatggatgagctagaccttttaattgttgggggctactggggaaaaggc
cttcgtggtggcatgatgtcccattttttgtgtgcggttgctgagatgccttcacccggt
gaaaaaccctctgtgtttcattccatttgccgtgttggttctggctacaccatgaaagaa
ctgtacgatcttagcttgaaattagccaaccactggaaaccatatcgtaaaaagaatcct
ccttgtaatatcttgtgtgggacagagaagcctgaagtgtatatcgaaccttgtaattca
gtcattgttcaagtgaaagcggctgagattattagtagcgatatgtacaaaactgattgt
acgttgcgtttcccaaggattgagaagatcagagaggacaaaaaatggagtgaatgtatg
actcttgatttgttagaacagctcagaggtaaagcttcaggaaagctagccaccaagcat
cttgatattggtcacaatgcaccacaaggaaaaaaacgtaaaactatgcctaaggttaaa
caatttattggagtaatggatacgttcaaagcccctgatctttctaatgtgagcagactt
tccagcatatttgaagatgttgagttttgtgttatgactggaacagaaaactgtccaaaa
aatgaactagaaagcaaaatagctgaatttggtggtagcatagtacaaaacccaggtcct
gacacatactgtgttgttgtagggactgagaacatccgagtgaaaaatataatttcttcc
agcaagcatgatgttgtgaaggcagagtggcttttgcagtgctttgaaagacaggcattt
atgccatggcagcccattttcatgattcagatgtcctctgaaacaaaacaatattttgcc
tgtaaatacgactgctatggtgatagttacactgctgatacggatgtggcccagttgaag
gagttgttctcaaggatgaataatttgaaggagaagatctcttgggatgtgattgctgac
acagaagaacgatattcctggaattgctctccattcaatatatttaggcaacacactgtt
tacattggcatctctgatgaagcaggcagtttaagagacaaagttaatcggacaagtttg
ctcactagcgcattgatgcttcgctttcatggagcgcgagtcacctcgcagctggaggaa
ggagtatcccacgtcatcatcggagaagatcgtggtcgggtaaaggagataaaggcagtc
agacgaacatttagaagaaagtttaaaatagtgtctgaacaatgggtaaaggattcccta
aaggctgggaagctacaaaatgaagatgtttacctcatttaa
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