Sphaerodactylus townsendi (Townsend's least gecko): 125438893
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Entry
125438893 CDS
T08213
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
stow
Sphaerodactylus townsendi (Townsend's least gecko)
Brite
KEGG Orthology (KO) [BR:
stow00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
stow03036
]
125438893 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
stow03400
]
125438893 (SMCHD1)
Chromosome and associated proteins [BR:
stow03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
125438893 (SMCHD1)
DNA repair and recombination proteins [BR:
stow03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
125438893 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
SMC_hinge
HATPase_c_3
MG4
HATPase_c
UFL1_C
Motif
Other DBs
NCBI-GeneID:
125438893
NCBI-ProteinID:
XP_048363518
LinkDB
All DBs
Position
LG09:complement(44292886..44390138)
Genome browser
AA seq
1980 aa
AA seq
DB search
MAVERNDAGSGLTVFVYDRRQDVLSDDSEKVVHCHEESYEGFRSAVYQACGISPEETFVI
TTTNRQQITSENFGGIVQDRMTFYLLQSIDQSLPSATKERIEFVPHYDTLVKSGMYEYYA
SEGQNPLPFALAELIDNSLSATSRNTGVRSIQLKLVFDDAQGKPAIAVVDNGRGMTSKQL
NNWAVYRLSKFIRQGDFESDHSGYIRPAAAPRSLNSDISYFGVGGKQAAFFVGQSTRMIS
KPANAQDVHELVLSKEDFEKKEKNKEAIYSGFIRNRKPSDSSHIVNDDERFLHNLIMEEK
NKESFTAVVITRVQPDHAQYLKNNFYLWTRQLAHIYHYYIHGPKGNENNLPMKDSGVFNS
IDIEITMFEKGKIPKIVNLREIKDDMQTLYINTAADNFEFKAHVEGEGVVEGIIRYHPFL
YDKESYPEDPCFPSKLKEDDDDDECFLVEKGGRGKRPVFECFWNGRLIPYSTVETFEWCA
VPKKRIVPVECYNRISGVLFTNDKFQVSTNKLTFMDLELKLKDKHTLFTRVVNGQEQRMK
IDREFTLWLKDCHEKYDKQIKFTFLKGIITRTDLPSKRMQSPWAAYSAIEWDGKTYETGQ
LVKTIKTVPIFYGSILQFFLYGDHDGDVYATGGEVQIALEPQALYDERKIIPICKLDRSV
SDKAVKKYVEEEMARLPDKLSVTWPEGDELLSNQTRHAGTTIGALRIEILNKKGEAMQKL
PGASHGGSKKLLVELKVILHAPDGDKEIISHISQHGGKWPYWFKKMETINKLGSYTLKLQ
VVLNESNADTYAGRPLPSTVFKFNIIAGKPHRFSIGLLDPPFRIGIPFSIPLNVQDEFGH
DTDLRDDIIPQLEASGLTLKYEEMDRGPNSVIKGVIAKGTVNSFQGKNFTLKVLLPGLKE
DSHVLKIKLLPGLPCRLNVRPDSNILKIENGTSFPFQVEVLDEVGNITAQPKLIVYCKFS
GAPNLPTYSTDCSTAGWNILTGPALHVQNIKKDQTLKAKIEIPTCRNVPPVEKTIKLLPS
NRVARLQIFNVVEEQAIQIKHQDEISWIAGDLMQNLIFQMYDEIEREVIITPALTEKIQA
NWTAEINREKLLKGLLPDVQVPTSVKDKRYCQVVFRDDRVSLETAFTVRPLPDEPKHIKC
KLNGSNIIQMGEKLQAEIEIMIIDQHGNQIQNLTSSSLNSLGISGNDLDKTDLITTWQAD
SQTFCIKGIRFKPGHPGTKELCFAWHEFSHFLRLNVIPGPPSKLILMDWTNLEESMLVIN
GKELPKSITVQLCDQWDNPTPKPNVKISLVKSSIIKVTPSNQLYKTDENGRAHLGVLNIH
APRGEHTLQLKATYNMTMLDCPVIKLNVLPDPSKPVHLNVKYDNKDAFVAGSSFPDFMIS
VISEDGNIIKNINPGRISMKIWEEDSSETRSNVTTFGCTQAKEDKDDGFFYFRNQNVPEK
VGSYSIQFAFAIDKVNILSSEQIVVEVVPNEPVKLMPASLPHTPAVSNAASVGSRTLVKD
LSFIIMDEYKNNSGNDLDGKIMVKIKSSTGKDGDIPLFQGKTSTVEFPFHKGIAEIEALV
LAENSPGRHSTKYILVFEPIIPTLERNLEPYCLPFMFYNDFKTQQQMATLTKQRDNLVQS
VSIYRSMLDTSNKLLSEIKCRVQEAKMKEAHLKAELKKQQIDLPETNVLQHVDSLLRQKK
SEQEEIKRQPRRTCGIAHYNKGSQDVLGKIAHLATIEENEAAKVISWHLASDMDCVVTLT
TTAARRIFDETQGRQQVLPLDSIYKKNLSNWNRPLPHFRNGRKCFDPLGNPVFARHLLTF
PEHQENCQTVFGLILGDTIIVDSLDAANHYRKEVVKFAYCPTLLTREGDRVRPNGKFGGL
QNKVPPVDKLRGMVFAAPLPQQYNVLSTQIELLHQYHATVVRLNKVNAEHEEQEQSLNSP
DMQKKKEELAEQEKDLKSIEEKIGMTPTGRCSKSSLRSKALDVNDSPSPPKRMRREIFKS
NT seq
5943 nt
NT seq
+upstream
nt +downstream
nt
atggcagtagagaggaatgacgccggcagtggcctgacggtcttcgtgtacgatcggagg
caggatgtactctcggacgacagcgagaaagtcgtccactgtcatgaggagagctatgag
ggcttccgcagcgccgtctaccaggcatgtggcatttccccagaagaaacatttgttatc
acaacaactaacagacaacagatcaccagtgaaaattttggtgggattgttcaagacagg
atgactttctacttgttgcagtcaattgatcaatcactcccctctgcaacaaaggagcgc
attgagttcgtaccacattatgacacacttgtgaaaagtggaatgtatgaatattatgct
agtgaagggcaaaatccgctgccatttgcacttgcagaattaattgataactctttatca
gctacttctcgaaatactggtgttcgaagcatacagttaaaactggtatttgatgatgcc
caaggaaagccagctattgctgttgtagacaatggaagaggcatgacttctaaacaactt
aataattgggctgtgtatcggttgtcaaaattcatacggcaaggtgactttgaaagcgat
cattcaggatacatacgccctgcagcagccccacgcagtttgaacagcgacatatcatat
tttggggtcggtggaaaacaagcagcattttttgttggtcagtcaaccagaatgataagc
aagccggcaaatgctcaagatgttcatgaactggttctttctaaagaagattttgaaaag
aaagagaaaaataaagaagctatttacagtggattcattagaaatagaaagccttctgac
tcttcccacattgttaatgatgatgaacgattcctgcacaatctcataatggaagaaaag
aataaagaaagtttcactgcagtcgttattacgagagtacagccagatcatgcgcagtac
ttgaaaaacaacttttacctttggacaagacaactggcacacatatatcattactatata
catggaccaaaaggaaatgaaaataacttgccaatgaaggactcgggagttttcaacagt
attgatattgagataactatgtttgaaaaaggaaagatacccaagattgtgaatcttaga
gagatcaaagatgatatgcagactttatatataaatacagctgctgataattttgagttt
aaggctcatgttgaaggagaaggtgtagtggaaggcattattcgttaccatcctttcttg
tatgataaagaatcctatcctgaagatccttgctttccttcaaagttaaaagaagatgat
gatgacgatgaatgctttttagtagagaagggaggcagaggaaagagacctgtttttgaa
tgtttttggaatggaagattaataccctactcaacagtggaaacttttgagtggtgtgct
gttcccaagaaaaggattgtcccagttgaatgttacaacagaatttctggagtactattt
acaaatgataaatttcaggtcagcacaaacaagctgactttcatggatttggagttaaaa
ttaaaagataaacatacactttttaccagagtcgtcaatggacaggaacagagaatgaaa
attgacagagaatttacattatggctcaaagactgccatgaaaaatatgacaaacagata
aaattcacttttttaaaaggaataattacacgcactgatctcccttcaaaaagaatgcag
agtccttgggcagcatattcagcgatagaatgggatggaaaaacatatgaaactgggcag
ctggtaaaaacaattaaaactgttccaatattctatggaagtatactgcaatttttttta
tatggagatcatgatggagatgtgtatgctactgggggagaggttcagatagctttggaa
cctcaggcattgtacgatgaaagaaagattattccaatatgcaaacttgaccgttcagta
tcggacaaagctgtgaagaaatatgttgaggaggaaatggctaggcttcctgacaagttg
tcagtaacatggcctgaaggagatgaattgttatcaaatcaaaccagacatgcaggaact
actataggggcattaagaattgaaatattgaataaaaagggggaagccatgcaaaagctc
cctggtgcaagtcacgggggatcaaaaaaactgcttgtggaactcaaggttattttacat
gcccctgatggagataaggaaatcatttctcatatcagtcagcatgggggtaaatggccc
tactggttcaaaaaaatggaaactattaataaacttggaagttacaccctgaaactgcaa
gttgtgttaaatgaaagtaatgcagacacttatgcgggaagacctcttccatctacagtt
tttaaatttaacataatagcgggaaagcctcaccgcttttcaataggtcttttggatcct
ccatttcggattggaattccattcagtattcctttaaatgtgcaagatgaatttggtcat
gatactgatctgagagatgatattataccacaacttgaagctagtggtttaacattaaag
tatgaagaaatggatagaggaccaaactcggttataaaaggtgttattgctaaaggtact
gtgaacagcttccaaggcaagaactttactctgaaagttttacttcctggtttaaaggaa
gactcccatgttttgaaaattaaacttctcccaggccttccttgccggctaaatgtcaga
ccagattccaacatcttgaaaattgaaaatggaacatcattccctttccaggttgaagtg
ctggatgaagtaggaaatataacagcacaaccaaaactaattgtttattgcaagttttca
ggcgctccaaatcttcctacatattccacagattgcagcactgctgggtggaatatctta
actggaccagctctacatgtacaaaatataaagaaagatcagacacttaaagcaaagatt
gaaatacctacttgcagaaatgtgccaccagtggaaaagactattaaattgcttcccagc
aatcgtgttgcaagactacagatttttaatgtggtagaggaacaggctattcagatcaag
caccaggatgaaattagctggattgcaggtgacttgatgcaaaatcttatcttccaaatg
tatgatgagattgaaagagaggttataataacaccagctctgactgaaaaaatccaggca
aattggactgccgagattaatagagaaaaactgcttaaaggattgttgcctgatgtacaa
gtaccaacatctgtaaaagataagcgctattgtcaggttgtatttcgtgatgaccgtgta
tctctggaaactgcatttactgtcaggccacttcctgatgagccaaagcatattaaatgc
aaactaaatggatcaaacataatacaaatgggtgaaaagctgcaagctgaaattgagata
atgataatagatcagcatggaaaccaaattcaaaacctgacatcatcttctttgaattct
ttgggaatttctgggaatgatttggataagaccgatttgataactacttggcaggcagat
tcgcaaacgttctgtattaaaggcatcagatttaaaccaggccatcctggaaccaaagaa
ctgtgttttgcttggcatgaattttctcacttcttgagattaaatgtgattccaggacct
ccatcaaaattgattcttatggattggacgaacttagaggaatctatgttagtgattaac
ggcaaggagctgcctaaatctattacagtccagctttgtgatcagtgggataacccaact
cctaaaccaaacgtcaaaataagccttgtaaagtcaagcatcataaaggtcactccttca
aatcagctgtataaaacagatgaaaatggtagagcccatttgggagttcttaacatccat
gctcctaggggagagcacacattgcagcttaaagcaacatataacatgactatgttagat
tgtccagtaattaagctaaacgttctgcctgacccgagtaaacctgtacacttgaatgtc
aagtatgataataaagatgcctttgtagccggaagctcctttcctgatttcatgatcagt
gttatttctgaagatggtaacattattaagaatataaatcctggaagaatttctatgaaa
atatgggaagaggacagtagtgaaacccggtcgaatgttacaacatttggctgcacccaa
gctaaggaggataaggatgacggctttttttacttcaggaaccaaaacgttcccgaaaaa
gtgggctcgtacagcatccagtttgcttttgccattgacaaagtgaacatccttagcagc
gaacagattgtagttgaagtggtgcctaatgaaccagtgaagttgatgccagcatctctg
ccacatactcctgcagtctctaatgcagcttctgttggcagtcggacccttgtcaaggac
ttgagcttcattataatggatgaatacaaaaacaatagtgggaatgacttagatggaaaa
atcatggtcaaaattaaaagttccactgggaaagatggagacattccactgtttcagggt
aaaactagtacagttgagtttccatttcacaaaggaattgctgaaattgaggctcttgta
ctggcagaaaatagcccagggagacatagtactaaatatattcttgtgtttgagccaatc
ataccaactttggaaagaaacttggaaccttactgccttccatttatgttttacaatgat
tttaagacacaacagcagatggcgacacttacaaaacagagagacaatctagttcaatca
gtaagcatctacagaagtatgcttgatacctctaataagctactgtctgaaataaaatgt
cgggttcaggaagcaaaaatgaaagaggcccacctgaaggctgaactgaaaaaacaacag
attgatctacctgagacgaatgttctgcagcatgttgactcacttctgagacagaagaaa
tctgagcaggaagaaataaaaagacaacctagaagaacatgtggaattgcccactataat
aaaggcagccaagatgttttaggcaagattgcacacttggcaacaattgaagagaatgaa
gcagcaaaggttatctcatggcatttggcgagtgacatggactgtgtagtcactctgaca
actactgctgctcgtcgtatctttgatgaaactcaggggcggcagcaggtattgcctctt
gattctatttacaagaagaacctttcaaactggaacaggcctttacctcactttcgaaat
ggaaggaaatgtttcgatcctcttggaaatccagtgtttgccagacatttgctaacattt
ccagaacaccaagaaaactgccagacagtgtttggattgatcttaggagacaccattatt
gttgacagtttagacgctgccaatcattacagaaaagaggttgttaaatttgcatattgc
ccaactttactgacaagagaaggagacagagttcgcccaaatggaaaatttggaggcctt
cagaataaagttcctccagtggataaacttagaggaatggtatttgcagcacctctgcca
caacagtacaatgttctctccacacagatagaactccttcaccagtaccacgcaacagtt
gtcagacttaataaagtgaatgcagaacatgaagagcaggagcagtcattaaattctcca
gacatgcaaaaaaagaaagaagaacttgctgaacaagagaaggatctcaagtcaatagag
gagaaaataggtatgactccaacaggccgatgctccaaatcatcacttcgatcaaaagcg
cttgatgtgaatgatagtcccagtcctccaaaaagaatgcggagagaaatatttaaaagt
tga
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