Sphaerodactylus townsendi (Townsend's least gecko): 125445617
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Entry
125445617 CDS
T08213
Name
(RefSeq) TAR DNA-binding protein 43 isoform X1
KO
K23600
TAR DNA-binding protein 43
Organism
stow
Sphaerodactylus townsendi (Townsend's least gecko)
Pathway
stow03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
stow00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125445617
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stow03019
]
125445617
Messenger RNA biogenesis [BR:
stow03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
125445617
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TDP-43_C
TDP-43_N
RRM_1
RRM_7
RRM_PARP14_3
RRM_3
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
125445617
NCBI-ProteinID:
XP_048374737
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Position
LG16:complement(31926685..31935365)
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AA seq
415 aa
AA seq
DB search
MSEYIRVTEDENEEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI
LHAPDNGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDL
KEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTDYETQVKVMSQRHMIDGRWCDCKLPNS
KQSPDEPLRSRKVFVGRCTDDMTADELRSFFSQYGEVVDVFIPKPFRAFAFVTFADDQVA
QSLCGEDLIIKGISVHISNAEPKHNSSRQLERGGRFGGNPGGFGNQGGFPNRGGGGGGGG
LGNNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQSQSGPSGNSQPQGN
MQREQNPGFSSGSNSYGGSNSGAAIGWGSSNAGSSSGFNGGFGSSMDSKSSGWGM
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atgtcggaatacatcagggttaccgaggatgagaatgaagaacccattgagatcccctca
gaggatgatgggactgtgttgctatctacggtcaccgctcagtttcctggggcttgtggc
ctgcgctacagaaatcctgtgtctcagtgtatgagaggagtccgattagtggaaggaatt
ctgcatgcaccagataatggctggggaaatctggtttatgttgttaattatcccaaagac
aataagcggaaaatggatgaaacagatgcctcatcggctgtgaaagtgaagcgagcagtg
cagaaaacgtctgatctcatcgttttgggactgccgtggaagacaactgaacaggatcta
aaagaatatttcagcacatttggagaggttctcatggtgcaggttaagaaggatataaaa
actggccattcaaagggtttcgggtttgtacgatttacggattatgaaacccaggtgaaa
gtcatgtctcagcgacacatgatagatggcagatggtgtgactgcaaacttccaaactct
aagcaaagtccagatgaacctttgcgtagcaggaaggtgtttgttgggcgttgcacagat
gacatgacagcagatgagcttcgttcgtttttttcacaatatggagaagtggttgatgtc
ttcatccccaaaccattcagagcatttgccttcgttacgtttgctgatgatcaggttgcc
cagtccctttgtggcgaggacttgatcataaaaggaatcagcgtccatatatccaatgct
gaacctaagcataatagcagtagacaactagaaagaggtggaagatttggtggtaatcca
ggaggctttgggaatcagggtggatttcctaacagggggggaggcggtggaggaggaggg
ttgggaaataaccagggcagtaacatggggggtggaatgaattttggagcctttagcatc
aaccctgccatgatggcggcagctcaggcagcgctccagagcagctgggggatgatgggc
atgctagcgagtcagcagagccagtctgggccgtctgggaacagccagccgcaaggcaac
atgcagagggagcagaacccaggcttcagttcagggagtaattcctacggaggctcaaac
tctggtgcagcaattgggtggggctcgtccaatgcaggctctagcagtggctttaatgga
ggttttggctcgagcatggattccaaatcatctggctggggaatgtag
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