Streptomyces sp. JL1001: R1Y80_26900
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Entry
R1Y80_26900 CDS
T11759
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
stpj Streptomyces sp. JL1001
Pathway
stpj03030
DNA replication
stpj03410
Base excision repair
stpj03420
Nucleotide excision repair
stpj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
stpj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
R1Y80_26900 (ligA)
03410 Base excision repair
R1Y80_26900 (ligA)
03420 Nucleotide excision repair
R1Y80_26900 (ligA)
03430 Mismatch repair
R1Y80_26900 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
stpj03032
]
R1Y80_26900 (ligA)
03400 DNA repair and recombination proteins [BR:
stpj03400
]
R1Y80_26900 (ligA)
Enzymes [BR:
stpj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
R1Y80_26900 (ligA)
DNA replication proteins [BR:
stpj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
R1Y80_26900 (ligA)
DNA repair and recombination proteins [BR:
stpj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
R1Y80_26900 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
R1Y80_26900 (ligA)
MMR (mismatch excision repair)
DNA ligase
R1Y80_26900 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
R1Y80_26900 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
HHH
zf-IS66
Zn_ribbon_TFIIB
DUF8512
Motif
Other DBs
NCBI-ProteinID:
XCN17038
LinkDB
All DBs
Position
5919185..5921416
Genome browser
AA seq
743 aa
AA seq
DB search
MAGEERVEQDGSVPAGVRETHALLAEQIEEHRFRYYVKDQPVVSDAEFDRLLRSLEALED
EHPPLRTPDSPTQKVAGPYITEFTSVEHRERMLSLDNAFDDEELAAWADRVAKETGTPDH
HFLCELKVDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPHRLKGEDIPALV
EIRGEVFFPMEGFEELNARLVAADDKPFANPRNAAAGSLRQKDPKVTASRPLHMVVHGIG
AHEGLSIDRLSQAYDLLHSWGLPTAQHNRVVDSLAGVREFIAYFGEHRHSVEHEIDGVVV
KLDEIPLQGRLGSTSRAPRWAIAWKYAPEEVNTKLVNIRVGVGRTGRVTPYAQVEPVEVA
GSEVEFATLHNQNVVKAKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGTEKAFEMPTHCP
ECGTELRPMKEGDIDLRCPNARTCPAQLRERVFYLAGRKSLDIDHFGYVAAAALTRPLEP
AEPVLKDESDLFSLTIEQLLPIRAYVLDQDSGLPKRDPKTGEEKIATVFANQQGEPKKNA
VAMLEGIAAAREAPLARILTGLSIRHVGPVAAQELARQFRSVDRIDEATEEELAAADGVG
PTIAASVKQWFAEDWHREILRKWREAGVRMADEGSDEDEGPRPLEGLTVVVTGTLAGHTR
DGAKEALQTLGAKVTGSVSKKTAFVVVGDNPGSKYDKAMQLKVPVLDEDGFAILLQDGPE
RAREAALAVPEAAPGAAPEGSGA
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcgaagagcgggtggagcaggacggttcggtcccggcgggcgtgcgggagacc
cacgccctgctggccgagcagatcgaggagcaccgcttccggtattacgtgaaggaccag
ccggtcgtcagcgacgccgagttcgaccggctgctgcgctccctggaggccctggaggac
gagcaccccccgctccgcaccccggactccccgacccagaaggtcgccgggccgtacatc
acggagttcacctccgtcgagcaccgcgagcggatgctctccctggacaacgccttcgac
gacgaggagctggccgcctgggccgaccgcgtcgccaaggagaccggcacccccgaccac
cacttcctgtgcgagctgaaggtcgacggcctcgccgtcaacctcacctacgagcacggc
cgcctcacccgggcggccacccgcggcgacggccgcaccggcgaggacatcacccccaac
gtccggacgatcgccgagatcccgcaccgcctgaagggggaggacatcccggcgctcgtc
gagatccgcggcgaggtcttcttcccgatggagggcttcgaggagctgaacgcccggctg
gtcgccgccgacgacaagccgttcgccaacccgcgcaacgcggccgccggatcgctgcgc
cagaaggaccccaaggtcaccgcgagccgtccgctgcacatggtggtgcacggcatcggc
gcccacgagggcctgagcatcgaccgcctctcccaggcctacgacctgctccactcctgg
ggcctgcccaccgcccagcacaacagggtcgtcgactccctcgccggcgtacgggagttc
atcgcgtacttcggcgagcaccggcactccgtggagcacgagatcgacggcgtcgtcgtc
aagctcgacgagatcccgctccaggggcggctgggctccacctcgcgcgccccgcgctgg
gccatcgcctggaagtacgcccccgaagaggtcaacaccaagctcgtcaacatccgcgtc
ggcgtcgggcgtaccggccgcgtcaccccgtacgcccaggtcgagccggtcgaagtggcc
ggttccgaggtcgagttcgccaccctccacaaccagaacgtggtcaaggccaagggtgtc
ctcatcggcgacaccgtggtcctgcgcaaggcgggcgacgtcatcccggagatcctcggc
cccgtcgtcgatctgcgcgacggcaccgagaaggccttcgagatgccgacccactgcccc
gagtgcgggacggagctgcgcccgatgaaggagggcgacatcgacctccgctgccccaac
gcccgcacctgcccggcccagttgcgcgagcgcgtcttctacctcgccgggcgcaagagc
ctcgacatcgaccacttcggctatgtggccgccgcggctctcacccgcccgctggagccc
gccgagcccgtcctcaaggacgagagcgatctgttctccctcaccatcgagcagttgctg
ccgatccgggcgtacgtcctggaccaggacagcgggctgcccaagcgtgacccgaagacc
ggcgaggagaagatcgcgacggtcttcgccaaccagcagggcgagccgaagaagaacgcg
gtggccatgctggagggcatcgccgccgccagggaagcgcccctcgcccggatcctcacc
ggcctctcgatccggcacgtgggcccggtcgccgcccaggagctggcccgtcagttccgt
tccgtcgaccgcatcgacgaggcgaccgaggaggagctggccgccgccgacggcgtcggg
ccgaccatcgccgcctcggtcaagcagtggttcgccgaggactggcaccgcgagatcctc
cgcaagtggcgcgaggccggtgtgcggatggccgacgagggctccgacgaggacgagggc
ccccgccccctcgaagggctcaccgtcgtcgtcaccggcaccctcgcgggccacacccgc
gacggagccaaggaggcgctccagacgctcggcgccaaggtcaccggatcggtgtcgaag
aagaccgccttcgtggtcgtcggcgacaaccccggctccaagtacgacaaggcgatgcag
ctgaaggtgcccgtgctggacgaggacggattcgcgatcctgctccaggacggccccgaa
cgcgcccgggaagccgccctggccgtgccggaagccgcgcccggggcggccccggagggc
agcggggcgtag
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integrated database retrieval system
