Winmispira thermophila DSM 6578: Spith_1354
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Entry
Spith_1354 CDS
T02016
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
stq
Winmispira thermophila DSM 6578
Pathway
stq03030
DNA replication
stq03410
Base excision repair
stq03420
Nucleotide excision repair
stq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
stq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Spith_1354
03410 Base excision repair
Spith_1354
03420 Nucleotide excision repair
Spith_1354
03430 Mismatch repair
Spith_1354
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
stq03032
]
Spith_1354
03400 DNA repair and recombination proteins [BR:
stq03400
]
Spith_1354
Enzymes [BR:
stq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Spith_1354
DNA replication proteins [BR:
stq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Spith_1354
DNA repair and recombination proteins [BR:
stq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Spith_1354
NER (nucleotide excision repair)
GGR (global genome repair) factors
Spith_1354
MMR (mismatch excision repair)
DNA ligase
Spith_1354
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Spith_1354
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_5
BRCT
PTCB-BRCT
DNA_ligase_ZBD
HHH_2
Nlig-Ia
HHH
Auto_anti-p27
RNA_ligase
RecR_HhH
GFRP
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AEJ61618
UniProt:
G0GFS5
LinkDB
All DBs
Position
complement(1523197..1525290)
Genome browser
AA seq
697 aa
AA seq
DB search
MTEQEAKREIDRLVELLQRADYEYYVLGRPHLTDQEYDSLFERLKTLETRFPHLRRPDSP
IQRVGSDLTVDFPEVAHTIPVLSLDKAYTETEVLSWIEKTERAAGKPLGFVIEEKIDGVS
LVLYYRGGILDRAVTRGNGRVGNDITPNARTIRQIPLRIPENGEVVVRGEVYLPLQYFDE
INARMEVPYANPRNLAGGVLRRKNSAEVARVPLHFLAYDGYLPFPVATYTESLDYLIDWG
FPVNPRHERLPAGTPDREARIRTFIERERSGRATLDYQIDGLVFKVNELDVRERLGYTGH
HPRWAIAYKFEAPQAVTELLRIDVQVGRTGRVTPVARLKPVELSGSTISNVTLHNEDYVQ
ALELAPGDLVAISKRGDVIPAIEKVVEKNEEGVPVWRMPEHCPECGSPLERRGAHHFCPN
RNCPAVITGRLKFFVSPKQMDIRVLGNETIDFLVEKGYIRRIPDLYTFDYWKLLDEPGFG
EKKISQIVQGIEESKKRPFSTVLVALGIPEVGPSVVETLIRGGITSIDRLFTIADRGDVE
ALTRLEGIGEKTARQLMETLRDPEWRKEIEELRKAGLSFEEERPTVVSGGPFEGQAWCVT
GSFRHFTPRSKAEELIASLGGKVVSSVSSKTTHLLVGENPGSKLEKARSLGVRLVSEDQF
IEMLKAAGVDPFNEKEKGPSASQEASEPPRQPDLFSS
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgaccgagcaggaagccaagagggagatcgaccgactcgtcgaactcctccagcgggcg
gactacgagtactacgtcctcggccgaccccacctcaccgaccaggaatacgacagcctc
ttcgagcgcctcaagaccctcgagacacggttcccccacctccggcgccccgattccccc
atccagcgcgtgggctccgatctcaccgtggacttccccgaagtcgcacacaccatcccg
gtcttgagcctcgacaaagcctacaccgagaccgaggtcctctcctggatcgagaagacc
gagcgcgccgcaggcaagcccctcggattcgtcatagaagagaagatcgacggcgtctcc
ctggtgctctactaccggggcggcatcctcgatcgtgccgtcacccgcggcaacggaagg
gtggggaacgacatcacccccaacgccagaaccatcaggcagatccccctgcgcattccg
gaaaacggagaggtcgtggtccggggtgaggtctacctccccctccagtacttcgacgag
atcaacgcccggatggaagtcccctacgccaacccccgcaacctcgcagggggcgtactg
cgcaggaagaacagcgccgaggtcgcccgggtacccctccacttcttggcctacgacggc
taccttcccttcccggtcgccacctacaccgagagcctcgactacctcatcgactgggga
ttcccggtgaacccgcgccacgaacgcctccccgccggaacccctgaccgtgaagcccgc
atccgcaccttcatcgagagggaacgcagcgggcgggcgaccctcgactaccagatcgac
ggcctggtcttcaaggtgaacgaactcgatgtccgggaacgcctcggctacaccggccac
catccacgatgggccatcgcctacaaattcgaggccccacaggccgtgaccgaactcctc
cgcatcgacgtccaggtggggcgcaccggccgcgtcacccctgttgcacgcctcaagccc
gttgagctctcgggttccaccatctccaacgtcaccctccacaacgaggactacgtccag
gccctcgagctcgcacccggcgacctcgtcgccatctccaagcggggggacgtcatacct
gccatcgagaaggtggtggagaagaacgaggagggcgtgccggtctggcgcatgcccgaa
cactgccccgagtgcggctctcccctcgagcgccggggagcccaccacttctgtccaaac
aggaactgccctgccgtgatcacgggcaggctcaagttcttcgtgagccccaaacagatg
gacatccgtgtcttggggaacgagaccatcgacttcctcgtggagaagggctacatccgg
cgtatccccgacctctacaccttcgactactggaagctcctcgacgagcccggttttggg
gagaagaagatcagtcagatcgtccagggcatcgaggagagcaagaagcgccccttctcc
accgtgctcgtggccctcgggatcccggaggtaggcccgagcgtggtcgagaccctcata
cggggcggcatcacgagcatcgaccggctctttaccatcgccgatagaggtgatgtcgaa
gccctcacccggctcgaaggcataggtgagaagaccgcccggcagctcatggagacactg
agagaccccgagtggcggaaggaaatcgaggagctccggaaggcaggcctctccttcgag
gaggagcgacctaccgtggtctccggcggccccttcgaaggccaggcctggtgtgtgacc
gggagcttccggcacttcacccccagaagcaaggccgaagagctcatcgcctctctcggc
gggaaagtggtaagcagtgtctcatcgaagaccacccacctcctcgtgggcgaaaacccc
ggctccaagctggagaaggcccgctccctcggtgtccgcctggtctccgaagaccagttc
atcgagatgctgaaggccgcgggggtggaccccttcaatgagaaagagaaggggccctct
gcctcgcaagaggcatctgagccccctcgtcaaccggatctcttctcctcctga
DBGET
integrated database retrieval system
