Streptococcus sp. A12: ATM98_03245
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Entry
ATM98_03245 CDS
T05522
Symbol
ligA
Name
(GenBank) aromatic ring-opening dioxygenase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
stra
Streptococcus sp. A12
Pathway
stra03030
DNA replication
stra03410
Base excision repair
stra03420
Nucleotide excision repair
stra03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
stra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ATM98_03245 (ligA)
03410 Base excision repair
ATM98_03245 (ligA)
03420 Nucleotide excision repair
ATM98_03245 (ligA)
03430 Mismatch repair
ATM98_03245 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
stra03032
]
ATM98_03245 (ligA)
03400 DNA repair and recombination proteins [BR:
stra03400
]
ATM98_03245 (ligA)
Enzymes [BR:
stra01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ATM98_03245 (ligA)
DNA replication proteins [BR:
stra03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ATM98_03245 (ligA)
DNA repair and recombination proteins [BR:
stra03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ATM98_03245 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ATM98_03245 (ligA)
MMR (mismatch excision repair)
DNA ligase
ATM98_03245 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ATM98_03245 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
Relaxase_C
Zn_ribbon_PF0610
Motif
Other DBs
NCBI-ProteinID:
AMP66790
LinkDB
All DBs
Position
complement(652754..654712)
Genome browser
AA seq
652 aa
AA seq
DB search
METRIKELVNLLNQYAEEYYTKDAPSVSDQEYDRLYRELVELEEAYPELVQPNSPTHRVG
GTILTGFEKYQHTYPLYSLQDAFSYEELVAFDQRVRKEFPSVTYVCELKIDGLSISLSYV
DGVLETGATRGDGSIGENITENLKRVRDIPLVLPEPLTLTVRGECYMPRASFDAVNLSRQ
ENGEAEFANPRNAAAGTLRQLDTKIVAERKLATFLYQEASPTDQATQEKVLAKLNRLGFV
VNPHHKTATSIEQVWTYIQEVAAMRDQLPYDIDGVVIKVNDLAVQEELGFTVKAPKWAVA
YKFPAEEKEAKLLSVDWTVGRTGVVTPTANLTSVQLAGTTVSRATLHNVDYIAEKDIRKD
DTVIVYKAGDIIPAVLRVVMDKRVSEERLEIPSHCPSCQSELLHFEDEVALRCINPRCPA
QIKEGLAHFASRDAMNITGLGPAVVEKLFAKELVQDVAGIYRLTVDDLLQLDGFKEKSAQ
KLVDAIQTSKGNSAEKLLFGLGIRHVGSKASQLLLQEFHSIPAIADAKVEKIAAIDSLGM
VVAESLKRYFAQEGSQLLLEELKDAGVNLDYLGQKVAADAPLSGKTVVLTGKLERLTRSE
AKAKLEALGAKVTGSVSKKTDLLVAGSDAGSKLSKAQELSIEIQDEAWLESL
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atggaaaccagaataaaagagttagtaaatctactcaaccaatatgcggaagaatattat
accaaagatgctccctcggtatctgatcaagaatatgatcgtctataccgagaacttgta
gaattagaagaagcctatccagaactagtccaacccaatagtccaactcatcgggtcgga
gggacgattctaacaggatttgaaaaataccagcatacttacccgctttatagcttgcag
gacgccttttcttatgaagaattggtggcctttgaccaacgggttcgcaaggaatttcca
tctgtcacctatgtatgtgagttaaaaatagatggtctatctatttcactttcttatgtg
gatggcgtcctcgaaactggtgctacacggggggatgggagcattggagaaaatatcacc
gaaaaccttaagcgagttcgcgatattcctctagtcttaccggaacctcttacattaacc
gttcgcggagaatgttatatgccccgtgcgtcttttgatgccgtaaatttgtcccgccaa
gaaaatggagaggcagagtttgcgaatcctcgaaatgcggcagccggaactcttagacag
ttggatacgaagattgttgcggagcgtaagctcgcgaccttcctctaccaggaagctagt
cctactgatcaagcgacccaagagaaggtattagccaaattaaaccgcctcggttttgtc
gtcaatcctcatcacaagacagcgactagtatcgagcaagtttggacctatattcaagaa
gtggcagccatgcgagaccagcttccttatgatattgacggggtcgtgataaaagtaaat
gatctagctgttcaagaagaacttggttttaccgtcaaggctcccaaatgggcagtggct
tacaaattcccagctgaggagaaggaagcaaaactcttgtcagttgattggacagtcggt
cggactggagtggtgacaccaacggctaatttgacgtcagttcagttggcagggacgacg
gttagtcgagctactctccataatgtggattacattgctgagaaagatattcgcaaggat
gatacggtcattgtttataaggccggggacattatcccagctgtcttgcgtgttgtcatg
gataaacgagtatcggaagagcgattggagattccaagtcactgtccgagttgtcagagc
gagctccttcattttgaagatgaagtggccttgcgttgtatcaatccccgctgtccggct
caaataaaagaaggactcgcccactttgctagccgagatgccatgaacattacaggcttg
gggccagcagtggttgaaaaactgtttgctaaagaactggttcaagatgtagcaggtatt
tatcgcctgaccgtggatgatctcttacaattggatggatttaaagaaaaatctgcccag
aaattagtagacgctatccagacatcaaaggggaattctgctgaaaaactattgtttggt
ctgggaattcgtcatgtgggaagtaaggctagccagctcttgctacaggaattccattcc
attccagctatagcagatgcaaaggttgaaaagattgcagcgatagacagtttaggaatg
gtggttgctgaaagtcttaagcgttattttgcccaggaaggctctcaacttcttttagaa
gagcttaaggatgctggggtaaacttagattaccttggacaaaaggttgcagcagatgct
cctttgtccggtaaaacagttgtcttaactggtaaactggaacgtctgacacgttcggaa
gccaaggctaaattagaagccttaggggctaaagtcacaggttccgtgtccaaaaaaact
gacctattagtagcaggtagcgatgcgggaagtaaattaagcaaagcgcaggaattatcg
attgaaatacaggatgaagcctggcttgaaagtttatag
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