Streptomyces sp. CCM_MD2014: NI25_11750
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Entry
NI25_11750 CDS
T04862
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
strd
Streptomyces sp. CCM_MD2014
Pathway
strd03030
DNA replication
strd03410
Base excision repair
strd03420
Nucleotide excision repair
strd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
strd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NI25_11750
03410 Base excision repair
NI25_11750
03420 Nucleotide excision repair
NI25_11750
03430 Mismatch repair
NI25_11750
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
strd03032
]
NI25_11750
03400 DNA repair and recombination proteins [BR:
strd03400
]
NI25_11750
Enzymes [BR:
strd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NI25_11750
DNA replication proteins [BR:
strd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NI25_11750
DNA repair and recombination proteins [BR:
strd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NI25_11750
NER (nucleotide excision repair)
GGR (global genome repair) factors
NI25_11750
MMR (mismatch excision repair)
DNA ligase
NI25_11750
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NI25_11750
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
DUF8512
HHH
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
AIV34075
LinkDB
All DBs
Position
complement(2750287..2752494)
Genome browser
AA seq
735 aa
AA seq
DB search
MAGDKQGDKQAETTSVPAEARERHMRLAEQIEEHRFRYYVNDAPVVSDAEFDRLLRTLEE
LEERHPELRTPESPTQKVAGSYATEFTAVQHPTRMLSLDNTFNDDELAAWFDRIARELGE
QEYHFLCELKVDGLAVNLTYERGRLVRAATRGDGRTGEDITPNVRTIAEIPDRLAGDKVP
DLVEIRGEVYFPMEKFQELNARLNEAGDKPFANARNAAAGSLRQKDPRVTASRPLHMVVH
GIGILEGYSGMTRLSQAYDLLKTWGLPTSPHNRVVDGLDGVREFIAYYGENRHSVAHEID
GVVVKLDEIRLQGRLGSTARAPRWAIAYKYAPEEVNTKLVDIKVGVGRTGRVTPYAQVEP
VTVAGSEVEFATLHNQEVVKAKGVLIGDTVVLRKAGDVIPEILGPVADLRDGSEREFVMP
AKCPECGTPLKAMKEGDIDLRCPNARACPAQLRERVAYLAGRECLDIEHFGGVVAAALTG
PLEPSEPPLVDEGDLFDLTVEKLLPIKAYVLDPDSGLPKRDPKTGEEKIATVFANKEGEP
KKNTLALLRHIEEAKTRPLARFINGLSIRYVGPVAAQALAREFRSIDRIEQATEEELAST
DGVGGTIATAVKEWFAVDWHREIVRKWKAAGVPLEDRSTGEDEGPRPLEGLTVVVTGTLE
KFTRDGAKDALQSRGAKVTGSVSKKTSFVVVGDNPGSKYDKAMQLKVPVLNEDGFAVLLE
QGAEAAAGVALSAEE
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
gtggccggcgacaagcagggcgacaagcaggcggagacgaccagcgtgcccgccgaggcg
cgggagcggcacatgcggctcgccgagcagatcgaggagcaccgcttccggtactacgtg
aacgacgcccccgtcgtcagtgacgcggagttcgaccggctgctgcgcaccctggaggag
ctggaggagcggcaccccgagctgcgcacccccgagtccccgacccagaaggtcgccggt
tcctacgcgaccgagttcacggcggtgcagcaccccacgcggatgctctccctggacaac
accttcaacgacgacgaactggccgcctggttcgaccgcatcgcccgggagctgggcgag
caggagtaccacttcctgtgcgagctgaaggtcgacggactcgccgtcaacctcacctac
gagcgcggccgtctcgtccgcgccgccacccgcggcgacggccgcaccggcgaggacatc
acgcccaacgtccgcaccatcgccgagatccccgatcggctggcgggcgacaaggtcccc
gacctcgtggagatccgcggcgaggtctacttcccgatggagaagttccaggagctcaac
gcccggctgaacgaggcgggggacaagcccttcgccaacgcgcgcaacgccgcggccggt
tccctgcgccagaaggacccgcgcgtcaccgcctcccggccactgcacatggtggtccac
ggcatcggcatcctggaggggtactcgggcatgacccgcctctcccaggcgtacgacctg
ctcaagacctggggcctgcccacctccccgcacaacagggtggtcgacggcctggacggc
gtacgggagttcatcgcgtactacggcgagaaccgccactccgtcgcgcacgagatcgac
ggagtcgtcgtcaagctcgacgagatccgcctccagggccggctcggctccaccgcccgt
gcgccccgctgggccatcgcctacaagtacgcgccggaggaggtcaacaccaagctggtc
gacatcaaggtgggcgtcggccgcaccggccgcgtcacgccgtacgcgcaggtcgagccg
gtcacggtggccggcagcgaggtggagttcgccaccctgcacaaccaggaggtcgtcaag
gccaagggcgtgctcatcggcgacaccgtggtgctgcgcaaggccggtgacgtgatcccg
gagatcctggggccggtcgccgacctcagggacggcagcgagcgggagttcgtgatgccg
gcgaagtgccccgagtgcgggacgccgctgaaggccatgaaggagggcgacatcgacctc
cgctgtcccaacgcccgcgcctgcccggcccagttgcgcgagcgcgtcgcctacctcgcg
ggccgggagtgcctggacatcgagcacttcggcggcgtcgtggcggccgcgctcaccggc
ccgctggagccgtccgagccgcccctggtggacgagggcgacctcttcgacctcaccgtc
gagaagctgctgcccatcaaggcgtacgtcctcgaccccgacagcgggctgcccaagcgc
gaccccaagaccggcgaggagaagatcgccacggtcttcgccaacaaggagggcgagccg
aagaagaacaccctcgcgctgctcaggcacatcgaggaggccaagacccgcccgctggcc
cgcttcatcaacggcctctccatccgctacgtcggaccggtcgccgcccaggccctcgcc
cgcgagttccgctccatcgaccgcatcgagcaggccaccgaggaggagctggcgagcacg
gacggggtcggcggcaccatcgccaccgcggtcaaggagtggttcgcggtggactggcac
cgcgagatcgtccgcaagtggaaggcggccggggtgccgttggaggaccggtcgacgggg
gaggacgaggggccgcgcccgctcgaagggctcaccgtcgtcgtcaccggcaccctggag
aagttcacccgggacggagccaaggacgccctccagagcaggggcgcgaaagtgaccgga
tcggtgtccaagaagacgtcgttcgtcgtggtcggtgacaacccgggttcgaagtacgac
aaggcgatgcaactgaaggtgccggttctgaacgaggacggtttcgccgtgctgctcgaa
caaggagccgaagcggcggcgggtgtggcgctttcggctgaggaatag
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