Streptomyces sp. 769: GZL_03250
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Entry
GZL_03250 CDS
T03587
Name
(GenBank) DNA ligase C NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
stre
Streptomyces sp. 769
Pathway
stre03030
DNA replication
stre03410
Base excision repair
stre03420
Nucleotide excision repair
stre03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
stre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GZL_03250
03410 Base excision repair
GZL_03250
03420 Nucleotide excision repair
GZL_03250
03430 Mismatch repair
GZL_03250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
stre03032
]
GZL_03250
03400 DNA repair and recombination proteins [BR:
stre03400
]
GZL_03250
Enzymes [BR:
stre01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GZL_03250
DNA replication proteins [BR:
stre03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GZL_03250
DNA repair and recombination proteins [BR:
stre03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GZL_03250
NER (nucleotide excision repair)
GGR (global genome repair) factors
GZL_03250
MMR (mismatch excision repair)
DNA ligase
GZL_03250
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GZL_03250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
Nlig-Ia
HHH
Motif
Other DBs
NCBI-ProteinID:
AJC55836
UniProt:
A0A0A8EP78
LinkDB
All DBs
Position
complement(3481026..3483242)
Genome browser
AA seq
738 aa
AA seq
DB search
MAGEQHAAASEVPAAAREKHAQLAEQIEEHRFRYYVKDAPVVSDAEFDRLLRALEALEET
HPELRTPDSPTQKVAGSYATEFTEVAHRERMLSLDNAFDDEELSAWAERIATELGGDAKG
AGYHFLCELKVDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPHRLQGDRVP
ELVEIRGEVYFPMEKFLELNERLVADGKPPFANPRNAAAGSLRQKDPKVTATRPLHMVVH
GLGARDGLEIDRLSEAYDLLKEWGLPTATHNRVVDSLAAVREFIAHYGDPETRRTAVEHE
IDGVVVKLDEIRLQGRLGATSRAPRWAIAWKYPPEEVNTKLVDIRVGVGRTGRVTPYAVV
EPVTVAGSEVEFATLHNQDVVKAKGVLIGDTIVIRKAGDVIPEILGPVVDLRDGTEREFV
MPAECPECGSALQPAKEGDIDLRCPNARSCPAQIRERLFYLAGRKCLDIENFGYVAATAL
SQPLEPAEPPLTDEGGLFDLSVEELLPIKSHVLDPDTGLPKRDPKTGEEKVVTFFANQKG
EPKKNTLAMLENIQAAKERPLARILTGLSIRHVGPVAAQALAREFRSIDRIREASEEELA
AVEGVGGTIAASLKQWFAVDWHQEIIERWRAAGVRMEEEQSGETGPRPLEGVTVVVTGTL
QSHTRDGAKEALQALGAKVTGSVSKKTGFVVVGDNPGSKYDKAMQLKVPVLDDDGFAVLL
EQGPEAARAVAVTPPEEE
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
gtggctggcgaacagcacgcggcggcatccgaggtgcccgccgcggcacgggagaagcac
gcgcagctcgctgagcagatcgaggagcaccgcttccggtactacgtgaaggacgccccg
gtcgtcagcgacgcggagttcgacaggctgctgcgcgccctggaggccctggaggagacc
catcccgagctgcgcaccccggactccccgacccagaaggtcgccgggtcgtacgccacg
gagttcaccgaggtcgcgcaccgcgagcggatgctctcgttggacaacgccttcgacgac
gaggagctgtcggcctgggccgagcggatcgccaccgaactcggcggcgacgccaagggc
gccggctaccacttcctgtgcgagctgaaggtcgacggcctcgcggtcaacctcacctac
gagcacggccgcctcacccgcgccgccacccgcggcgacggccgcaccggcgaggacatc
acgcccaacgtccgcaccatcgccgagatcccgcaccgcctccagggcgaccgggtcccc
gagctggtcgagatccgcggggaggtctacttcccgatggagaagttcctggagctcaac
gagcgcctggtggccgacggcaagccgccgttcgccaacccccgcaacgccgcggccggt
tcgctgcgccagaaggaccccaaggtcaccgccacccgcccgctgcacatggtggtgcac
ggcctcggcgcccgcgacggcctggagatcgaccgcctctccgaggcgtacgacctgctc
aaggagtggggcctgcccaccgccacgcacaaccgcgtggtggactccctcgccgcggta
cgggagttcatcgcccactacggcgaccccgagacccgccgcacggccgtcgagcacgag
atcgacggcgtcgtggtcaagctcgacgagatccggctccagggccggctgggcgccacc
tcgcgggcgccgcgctgggcgatcgcctggaagtacccgccggaggaggtcaacaccaag
ctggtggacatccgcgtcggcgtcggccgcaccggacgggtcacgccgtacgcggtcgtc
gagccggtcaccgtcgccggttccgaggtggagttcgccaccctgcacaaccaggacgtg
gtcaaggccaagggcgtcctgatcggcgacaccatcgtcatccgcaaggcgggcgacgtc
attccggagatcctcggcccggtcgtcgatctgcgggacggcaccgagcgggagttcgtg
atgcccgccgagtgccccgagtgcggctcggcgctccagcccgccaaggaaggcgacatc
gacctgcggtgccccaacgcccggtcctgccccgcccagatccgcgagcggctgttctac
ctcgccggccgcaagtgcctggacatcgagaacttcggctatgtcgccgccaccgccctc
agccagccgctggagcccgccgagccgccgctgacggacgagggcggcctgttcgacctc
tccgtcgaggagctgctgcccatcaagtcccatgtcctcgacccggacaccggcctgccc
aagcgcgacccgaagaccggcgaggagaaggtcgtcaccttcttcgccaaccagaagggc
gagccgaagaagaacaccctggccatgttggagaacatccaggccgccaaggagcgcccg
ctggcccggatcctcaccgggctgtcgatccgtcacgtgggcccggtggcggcgcaggcg
ctggcccgggagttccgctcgatcgaccggatccgggaggcgagcgaggaggaactggcg
gccgtggagggcgtcggcggcaccatcgccgcctccctcaagcagtggttcgccgtggac
tggcaccaggagatcatcgagcgctggcgggccgcgggcgtccgtatggaggaggagcag
tcgggtgaaacgggcccgcgtcccctggaaggcgtcaccgtcgtggtaacgggcacactt
cagtcacacaccagagatggcgcgaaagaagcgctacaggctcttggtgcgaaggtgacc
ggatccgtttccaagaagaccggattcgtagtggtgggcgacaaccccggttcgaagtac
gacaaagccatgcagttgaaggtccccgtgttggacgacgacggcttcgctgtgctgctg
gagcagggtcccgaggcggcacgagcggtagctgtcactccgcctgaggaggagtga
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