Streptococcus troglodytae: SRT_05740
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Entry
SRT_05740 CDS
T06912
Symbol
dnlJ
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
strg
Streptococcus troglodytae
Pathway
strg03030
DNA replication
strg03410
Base excision repair
strg03420
Nucleotide excision repair
strg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
strg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SRT_05740 (dnlJ)
03410 Base excision repair
SRT_05740 (dnlJ)
03420 Nucleotide excision repair
SRT_05740 (dnlJ)
03430 Mismatch repair
SRT_05740 (dnlJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
strg03032
]
SRT_05740 (dnlJ)
03400 DNA repair and recombination proteins [BR:
strg03400
]
SRT_05740 (dnlJ)
Enzymes [BR:
strg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SRT_05740 (dnlJ)
DNA replication proteins [BR:
strg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SRT_05740 (dnlJ)
DNA repair and recombination proteins [BR:
strg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SRT_05740 (dnlJ)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SRT_05740 (dnlJ)
MMR (mismatch excision repair)
DNA ligase
SRT_05740 (dnlJ)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SRT_05740 (dnlJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
Hydrolase_6
RNA_lig_T4_1
Motif
Other DBs
NCBI-ProteinID:
BAQ23835
UniProt:
A0A1L7LHY8
LinkDB
All DBs
Position
569272..571230
Genome browser
AA seq
652 aa
AA seq
DB search
MKERMNELVQLLNQYAREYYTKDNPSVSDAEYDKLYRELVELEKEFPEDILPNSPTHRVG
DLVLDGFEKYRHEYPLFSLQDAFSREELEAFDRRIKAEFPQADYLAELKIDGLSISLTYV
DGRLQVGATRGDGTVGENITENLKRVRDIPLHLPENIDLTVRGECYLPKVSFKTINAERR
ENGEAEFANPRNAAAGTLRQLDTKVVAKRKLATFIYQEAGPTAASSQEAVLESFAKLGFT
VNPRHIISSSMDAIWQFIEEVAKERTELAYDIDGVVIKVNSLALQEALGFTVKAPRWAIA
YKFPAEEKSAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYIAEKDIRIG
DTVVVYKAGDIIPAVLHVVESKRDQQMPLPIPTVCPSCQSELIHFEDEVALRCVNPRCPA
QLKEKLIHFASRDAMNIIGLGPAIVEKLFTAELICDVADIYQLTPENLMQLEGIKEKSAT
KLYKAIQASKASSAEKLLFGLGIRHVGSKASRLLMERFESLEQLAAADFDDIAAIDGLGV
VIAESLKTYFATAGAQKLLIELKTAGLNLTYLGKKTASDAILSGITVVLTGKLTNLTRNQ
AKEKLQNLGANVAGSVSKKTSLVIAGSDAGSKLEKAKTLGIEIKDEAWLESL
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaacgtatgaatgagctggttcagcttcttaatcaatatgccagagaatattat
acaaaagacaatcccagtgtttcagatgctgagtacgataaactctatcgtgaacttgta
gaacttgaaaaagaatttccagaggacattcttcctaatagtccgacgcatcgtgtgggt
gaccttgttttagatggttttgaaaaatatagacatgagtatcctttattttctttacaa
gatgctttttctcgtgaagaattggaagcttttgataggcgtattaaagcggaatttccg
caggctgattatttagcagaattgaaaattgatggtctttccatttctctaacctatgtt
gatggccgtttacaagttggggctaccagaggagacggaacggttggtgaaaatattaca
gagaaccttaagcgtgtgcgagatattccactgcatttacctgaaaatattgatttgaca
gtacgtggggaatgctatttgcctaaagtttcctttaaaactatcaatgctgagcgtagg
gaaaatggtgaggctgaatttgcgaatccgcgaaatgcagcggcaggcaccttgcgtcaa
ttggatactaaggttgtggctaaacgaaaattggcgacttttatctatcaagaggcaggt
ccgacagctgccagcagtcaggaagcagtactagaaagttttgccaagctcggttttaca
gtcaatcctcgtcatattatttcctcatcgatggatgctatttggcagtttattgaagag
gttgctaaggaaagaactgaacttgcctatgatatcgatggcgttgttatcaaagtgaac
agtttggctctacaagaggcgctcggttttacagttaaggcacccagatgggccattgct
tataaatttccagcagaggaaaaatcagcagaaattttgtcggttgactggacagttggt
cgaacaggggttgtgacaccaacagctaatttaacacctgttcagttggcaggaacgacg
gtcagccgggcaaccttgcacaatgttgactacattgctgaaaaggatatccgaattggt
gatacagttgttgtctataaggctggagatattattccggcagttttacatgtcgttgaa
agcaagcgtgaccagcagatgccgctgccaattccaacagtctgtccgtcctgtcagagt
gaactgatccattttgaggatgaggtggctcttcgctgtgttaatccacgctgtccagcc
caattaaaggaaaaattgattcattttgctagtcgtgatgctatgaatattataggatta
ggtccagctattgttgaaaaattatttacagcagaactcatttgcgatgtagctgatatc
tatcagttaactcctgagaaccttatgcagctcgaagggatcaaggaaaaatcagcaact
aagctttataaggctattcaggcttccaaagctagttcagccgaaaaacttttatttgga
ttgggtattcgtcatgtcggcagtaaggcgagcagacttcttatggaacgctttgagagt
cttgagcagttagctgctgctgattttgacgatattgctgctattgatggtttgggagtt
gttattgcagagtccttaaaaacttattttgcaacagcaggtgcacagaaacttttgata
gagttaaaaacagcaggtttgaacttgacttatcttggcaaaaaaacagcaagtgatgcc
attttatctggaataacagttgttctgactggtaaattaacaaatttgacacgtaatcaa
gcaaaggaaaaactgcagaatcttggtgccaatgtagctggaagtgtttctaaaaaaacc
agtttggtcatagcagggagtgatgcaggttctaaattagaaaaagcaaaaactttagga
attgaaattaaagatgaagcttggctagaaagtttgtga
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