Streptacidiphilus sp. P02-A3a: GXP74_33370
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Entry
GXP74_33370 CDS
T08580
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
strh
Streptacidiphilus sp. P02-A3a
Pathway
strh03030
DNA replication
strh03410
Base excision repair
strh03420
Nucleotide excision repair
strh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
strh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GXP74_33370 (ligA)
03410 Base excision repair
GXP74_33370 (ligA)
03420 Nucleotide excision repair
GXP74_33370 (ligA)
03430 Mismatch repair
GXP74_33370 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
strh03032
]
GXP74_33370 (ligA)
03400 DNA repair and recombination proteins [BR:
strh03400
]
GXP74_33370 (ligA)
Enzymes [BR:
strh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GXP74_33370 (ligA)
DNA replication proteins [BR:
strh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GXP74_33370 (ligA)
DNA repair and recombination proteins [BR:
strh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GXP74_33370 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GXP74_33370 (ligA)
MMR (mismatch excision repair)
DNA ligase
GXP74_33370 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GXP74_33370 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
RNA_lig_T4_1
Motif
Other DBs
NCBI-ProteinID:
QMU72410
LinkDB
All DBs
Position
complement(7907815..7910067)
Genome browser
AA seq
750 aa
AA seq
DB search
MEESPVAADVPEPDRARHAELARELEEHRRRYYGDDAASISDAEFDALMRELMAIEERHP
ELVTPESPSQKVGGALSEHLAKVTHLERLLSLDNAFNDEELDAWAERVERELAGQEYHFL
CELKIDGLAVNLTYEHGRLVRAATRGTGRVGDDITANALTIADIPQRLATDDPPELVEIR
GEVYMSTADFERFNAGLAAENDRRREENVRLLAEGRRPLALETLYSNPRNTAAGSLRMKD
PQATAARPLRMLVHGIGARKGFDIDCQSHAYQLLHAWGLPTATHNRVVDSIAGVKEFIAH
YGEHRHSVDHEIDGVVVKVDEIALQGRLSATSKVPRWAIAWKYPPEEAVGKLERIEVGIG
RTGRATPYAVLAAPVLIAGSMVQYATLHNQEVVKAKGVLLGDTVVLRKAGEVIPEILGPV
ESLRDGTEQAFVMPTHCHECGSELRPMSEGDIDLRCPNARYCPAQIRERIAYLGGRAALD
VEDLGYVAAVALTQPLEPATPPLADEGDIFNLTVEQLLPIKVLIRDPKTSLPKIDEVTGE
QKIVSFFANLKGEPKKTTLSLLENLEAAKQRPLARIITALSIRRVGPVAAQALAREFRDL
DRIAAASEEELAATEGVGPGIAAALVQWFAEDWHRDIIEKWRAAGVRLAEEGSDEEQAPR
PLEGLTVVVTGTLTDYTRDGAKEALQHLGAKVTGSVSKKTDFVVAGDNPGSKYDKAMQLK
LAVLDDDGFAVLLAQGPEAARAVAAPTPED
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
atggaggagagcccagtggcggctgacgtacccgaaccggaccgggcgcggcacgcggag
ttggcgcgggagctggaggagcaccgccgccggtactacggcgacgacgcggccagcatc
agcgacgccgagttcgacgccctgatgcgggaactgatggccatcgaggagcgccacccc
gagctggtcacccccgagtcgccgagccagaaggtcggcggtgcgctctccgagcacctg
gccaaggtcacccacctggagcggctgctcagcctggacaacgccttcaacgacgaggag
ctggacgcctgggccgagcgggtcgagcgggagctcgccgggcaggagtaccacttcctg
tgcgagctgaagatcgacggcctggcggtcaacctcacctacgagcacgggcggctggtc
cgcgccgccacccggggcaccggccgggtcggcgacgacatcaccgccaacgcgctgacc
atcgccgacatcccgcagcggctggccaccgacgacccgccggagctggtcgagatccgc
ggcgaggtctacatgtccaccgcggacttcgaacggttcaacgccgggctcgcggccgag
aacgaccgccgccgcgaggagaacgtccggctgctggccgagggccgccgcccgctggcg
ctggagaccctgtactccaacccgcgcaacaccgccgccggttcgctgcggatgaaggac
ccgcaggccaccgccgcccggccgctgcggatgctggtgcacggcatcggcgcccgcaag
ggcttcgacatcgactgccagtcgcacgcctaccagctgctgcacgcatggggcctgccg
acggccacccacaaccgggtggtcgactcgatcgccggggtcaaggagttcatcgcccac
tacggcgagcaccggcactcggtggaccacgagatcgacggcgtggtggtcaaggtcgac
gagatcgccctgcaggggcggctcagcgcgacctccaaggtgccgcgctgggccatcgcc
tggaagtacccgccggaggaggcggtcggcaagctggagcggatcgaggtcgggatcggc
cgcaccggccgggccaccccgtacgcggtgctggccgcaccggtgctgatcgccgggtcg
atggtgcagtacgccaccctgcacaaccaggaggtggtgaaggccaagggcgtgctgctg
ggcgacacggtggtgctgcgcaaggcgggcgaggtgatcccggagatcctcggcccggtg
gagagcctgcgcgacggcaccgagcaggcgttcgtgatgcccacccactgccacgagtgc
ggcagcgagctgcgcccgatgtccgagggcgacatcgacctgcgctgccccaacgcccgc
tactgcccggcgcagatccgcgagcggatcgcctacctcggcggccgggccgcgctggac
gtcgaggacctcggctacgtcgccgccgtggcgctgacccagccgctggagccggccacc
ccgccgctggccgacgagggcgacatcttcaacctgacggtggaacagctgctgccgatc
aaggtgctgatccgcgacccgaagaccagcctgccgaagatcgacgaggtcaccggcgag
cagaagatcgtgtcgttcttcgccaacctcaagggcgagccgaagaagaccacgctgtcg
ctgctggagaacctggaggcggccaagcagcgcccgctggcccggatcatcaccgccctg
tcgatccgcagggtcggcccggtcgccgcccaggccctggcccgcgagttccgcgacctg
gaccggatcgccgccgccagcgaggaggagctggccgccaccgagggcgtcggccccggc
atcgccgccgccctcgtccagtggttcgccgaggactggcaccgcgacatcatcgagaag
tggcgcgccgccggggtccgcctcgccgaggagggcagcgacgaggagcaggccccgcgc
ccgctggaggggctgaccgtggtggtcaccggcaccctcaccgactacacccgggacggc
gccaaggaggccctgcagcacctcggcgccaaggtcaccggctcggtctcgaagaagacc
gacttcgtggtggccggggacaaccccggctccaagtacgacaaggcgatgcagctgaag
ctcgcggtgctggacgacgacggcttcgcggtactgctggcgcaggggcccgaggccgcc
cgcgcggtcgcggcaccgaccccggaggattga
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integrated database retrieval system
