Peterkaempfera bronchialis: C7M71_021205
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Entry
C7M71_021205 CDS
T05561
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
stri
Peterkaempfera bronchialis
Pathway
stri03030
DNA replication
stri03410
Base excision repair
stri03420
Nucleotide excision repair
stri03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
stri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
C7M71_021205
03410 Base excision repair
C7M71_021205
03420 Nucleotide excision repair
C7M71_021205
03430 Mismatch repair
C7M71_021205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
stri03032
]
C7M71_021205
03400 DNA repair and recombination proteins [BR:
stri03400
]
C7M71_021205
Enzymes [BR:
stri01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
C7M71_021205
DNA replication proteins [BR:
stri03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
C7M71_021205
DNA repair and recombination proteins [BR:
stri03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
C7M71_021205
NER (nucleotide excision repair)
GGR (global genome repair) factors
C7M71_021205
MMR (mismatch excision repair)
DNA ligase
C7M71_021205
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
C7M71_021205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
PTCB-BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH_5
HHH
Motif
Other DBs
NCBI-ProteinID:
AXI79554
UniProt:
A0A345T0P9
LinkDB
All DBs
Position
4746325..4748598
Genome browser
AA seq
757 aa
AA seq
DB search
MAGDGKVVDLAEVPADVRERHSTLAQEIEDHRFRYYVKDAPVVSDAEFDTLMRELEGLEE
RYPVLRTPDSPTQKVGGAYSNEFAEVEHLERMLSLDNAMNDEELDAWAERIARELDGIPY
HFLCELKVDGLAVNLTYENGRLVRAATRGDGRTGEDITANVRTIAEIPDMLRTDGGHPAP
ELVEIRGEIYLPTEKFTELNAALAAENERRKAENEQRTAEGRRPLAMVRLFANPRNAAAG
SLRQKDPQVTAGRPLHMVVHGIGARRGLDLDCQSHAYDLLHAWGLPTARHNKVVGSLAEV
KEFIAYFGDNRHSVEHEIDGVVVKVDEIALQGRLGATSKSPRWAIAWKYPPEEVTAKLAS
IRIGIGRTGRATPYAVLAEPVKVAGSMVQYATLHNQEVVKAKGVLIGDTVVLRKAGDVIP
EILGPVEDLRDGTEQEFTMPRECHECGTELRPMSEGDIDLRCPNARHCPAQIRERIAYLG
GREALDIEGLGYVAATALTQPLEPADPPLADEAGIFDLKMEQLLPIRVLVRDPKSGLPKL
DDRTGKEKVVSFFATTKGEPKKTAQLLLDNLEAAKQRPLWRFVNGLSIRHVGPVAAQALA
REFRSLERIGEAGEEELAATEGVGPTIAAAITQWFAEDWHREIVRRWEAAGVRLEEEAVA
DEGPRPLEGLTVVVTGTLASHTRDGAKEALVSRGAKVTGSVSKKTAFVVVGENPGSKYDK
AVQLGVPVLDDDGFAVLLEQGPDAARALLGLPTAEED
NT seq
2274 nt
NT seq
+upstream
nt +downstream
nt
gtggccggtgacggcaaggtcgtggacctggcggaggtgccggcggacgtccgggagcgg
cactccacgctggcgcaggagatcgaggaccaccgcttccgctactacgtcaaggacgcg
cccgtcgtcagcgatgccgagttcgacacgctgatgcgggagttggaggggctggaggag
cgctatccggtgctccgcacccccgactcgcccacccagaaggtcggcggcgcctactcc
aacgagttcgccgaggtcgagcatctggagcggatgctcagcctggacaacgcgatgaac
gacgaggagctggacgcctgggccgagcggatcgcccgggagctggacggcatcccgtac
cacttcctctgcgagctcaaggtggacggcctggcggtcaacctcacctatgagaacggg
cggctggtccgcgccgccacccggggcgacggccgcaccggtgaggacatcaccgccaat
gtccgcaccatcgccgagatccccgacatgctgcggaccgacggcgggcaccccgctccg
gagctggtggagatccgcggcgagatctatctgccgaccgagaagttcaccgagctgaac
gccgcgctggccgccgagaacgagcgccgcaaggcggagaacgagcagcgcaccgccgag
ggcaggcgaccgctggcgatggtccggctcttcgccaacccgcgcaatgccgccgccggg
tcgctgcgccagaaggacccgcaggtcaccgcgggccgcccgctgcacatggtggtgcac
ggcatcggcgcccgccgggggctcgacctggactgccagtcgcacgcctatgacctgctg
cacgcctgggggctgccgaccgcccggcacaacaaggtggtcggctcgctggccgaggtc
aaggagttcatcgcgtacttcggcgacaaccggcactccgtcgagcacgagatcgacggc
gtggtggtcaaggtggacgagatcgccctccagggccgcctgggcgccacctccaagtcc
ccgcgctgggccatcgcctggaagtacccgccggaggaggtcaccgccaagctggcctcc
atccggatcggcatcggccgcaccggccgggccacgccgtatgcggtgctggccgagccg
gtgaaggtggccggctccatggtgcagtacgccaccctgcacaaccaggaggtggtcaag
gccaagggcgtactcatcggggacaccgtggtgctccgcaaggcgggggacgtcatcccg
gagatcctgggcccggtcgaggacctgcgggacggcaccgagcaggagttcacgatgccc
cgggagtgccatgagtgcggcaccgagctgcggcccatgtccgagggcgacatcgacctg
cgctgccccaacgcccggcactgcccggcccagatccgggagcggatcgcctacctcggc
ggccgtgaggcgctggacatcgaggggctgggctatgtcgccgccaccgccctcacccag
ccgctggaaccggccgaccccccgctggccgacgaggcgggcatcttcgacctgaagatg
gagcagctgctgcccatccgggtgctggtccgcgaccccaagtcgggcctgcccaagctg
gacgaccgcaccggcaaggagaaggtggtctccttcttcgccaccaccaagggcgagccc
aagaagaccgcccagctgctgctggacaatctggaggccgcaaagcagcgaccgctctgg
cggttcgtcaacgggctgtccatccgccatgtcggcccggtcgccgcgcaggcgctggcc
cgggagttccgcagcctggagcggatcggcgaggccggcgaggaggagttggccgccacc
gagggcgtggggccgaccatcgcggcggcgatcacccagtggttcgccgaggactggcac
cgcgagatcgtccggcgctgggaggccgccggcgtccggctggaggaggaggcggtcgcc
gacgaggggccgcgcccgctggagggcctgaccgtggtcgtcaccggcaccctcgcctcg
cacacccgggacggggccaaggaggccctggtctcccggggcgccaaggtcaccgggtcg
gtctccaagaagaccgcctttgtggtggtcggcgagaaccccggctccaagtacgacaag
gccgtgcaactgggcgtgccggtgctggacgacgacggcttcgccgtcctgctggagcag
gggccggacgccgcccgcgccctgctggggctgcccaccgccgaggaggactga
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