Streptomyces sp. RLB1-33: HEP84_35000
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Entry
HEP84_35000 CDS
T10398
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
strl Streptomyces sp. RLB1-33
Pathway
strl03030
DNA replication
strl03410
Base excision repair
strl03420
Nucleotide excision repair
strl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
strl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HEP84_35000 (ligA)
03410 Base excision repair
HEP84_35000 (ligA)
03420 Nucleotide excision repair
HEP84_35000 (ligA)
03430 Mismatch repair
HEP84_35000 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
strl03032
]
HEP84_35000 (ligA)
03400 DNA repair and recombination proteins [BR:
strl03400
]
HEP84_35000 (ligA)
Enzymes [BR:
strl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HEP84_35000 (ligA)
DNA replication proteins [BR:
strl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HEP84_35000 (ligA)
DNA repair and recombination proteins [BR:
strl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HEP84_35000 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HEP84_35000 (ligA)
MMR (mismatch excision repair)
DNA ligase
HEP84_35000 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HEP84_35000 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH_5
HHH
Motif
Other DBs
NCBI-ProteinID:
QIY73584
UniProt:
A0A6H1LFI8
LinkDB
All DBs
Position
7711080..7713275
Genome browser
AA seq
731 aa
AA seq
DB search
MAGDKDAQPNSLPAEAREQHAQLAEQIEEHRFRYYVKDQPVVSDAEFDQLLRSLEALEER
YPELRTPDSPTQKVAGAYATEFTSVQHRSRMLSLDNAFSDLELAAWAERVAKDVGTSDHH
FLCELKVDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPDRLKGDHVPDLVE
IRGEVYFPMEKFEELNARLVEAGDKLFANPRNAAAGSLRQKDPRVTASRPLHMVVHGIGA
LEGFESLTRLSEAYTLLHSWGLPTTRYAKVVDDLDGVREFIAYYGENRHSVEHEIDGVVV
KLDEIRLQGRLGSTARAPRWAIAWKYAPEEVNTKLVDIKVGVGRTGRVTPYAQVEPVTVA
GSEVEFATLHNQEVVKAKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGTEREFVMPAECP
ECGTPLRAMKEGDIDLRCPNGRTCPAQLRERVSYLAGRECLDIEHFGNVAAAALTRPLEP
AAPPLVDEGDLFDLTVEQLLPIKAYVLDQDSGLPKRDPKTGEEKVVTVFANQKGEPKKNT
LALLDNIAEAKSRPLARFINGLSIRHVGPVAAEALAREFRSIDRIEQATEEELAAVDGVA
GIIATSVKQWFTEDWHREIIRKWKAAGVRLEDEGSGEDEGPRPLEGLTVVVTGTLEHHTR
DGAKEALQSRGGKVTGSVSKKTSFVVVGDNPGSKYDKAMQLKVPVLNEEGFAVLLEQGPE
AAAEVALPTGE
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
gtggccggcgacaaggacgcacagcccaattccctgcccgccgaggcacgggagcagcac
gcccagctcgctgagcagatcgaggagcaccgcttccggtactacgtgaaggaccagccg
gtcgtcagcgacgcggagttcgaccagttgctgcgctcgctggaggccctggaggagcgg
tatcccgagctgcgcacccccgactccccgacccagaaggtcgcgggcgcgtacgcgacc
gagttcacctccgtccagcaccgctcgcgcatgctctcgctggacaacgctttcagcgac
ctggagctcgcggcctgggccgagcgtgtcgccaaggacgtgggcacctcggaccaccac
ttcctgtgcgagctgaaggtcgacggcctcgcggtcaacctgacctacgagcacggccgc
ctcacccgcgcggcgacccgcggcgacggccgcacgggcgaggacatcacgcccaatgtg
cgcacgatcgcggagattccggaccgcctcaagggcgaccacgtcccggacctggtggag
atccgcggcgaggtctacttcccgatggagaagttcgaggagctcaacgcccgcctggtg
gaggccggcgacaagctcttcgccaacccgcgcaacgcggcggcgggttcgctgcgccag
aaggacccccgcgtcaccgcgagccgccccctgcacatggtggtccacggaatcggcgcc
ctggagggcttcgagagcctcacccggctctccgaggcgtacacactgctgcactcctgg
ggcctgccgaccacgcggtacgcgaaggtggtcgacgacctcgacggcgtacgggagttc
atcgcgtactacggcgagaaccggcactccgtggagcacgagatcgacggagtcgtcgtc
aagctcgacgagatccgtctccagggccgcctcggttccacggcccgcgctccacgctgg
gccatcgcctggaagtacgcgccggaagaggtcaacaccaagctggtcgacatcaaggtc
ggcgtcggccgaacagggcgcgtcactccgtacgcgcaggtcgagccggtcaccgtggcg
ggctcagaggtcgagttcgcgactctgcacaaccaggaggtcgtgaaggccaagggcgtc
ctcatcggggacacggtcgtgctgcgtaaggccggtgacgtcatcccggagatcctcgga
ccggtggtggatctccgcgacggcaccgagcgggagttcgtgatgccggccgagtgcccc
gagtgcgggacgccgctgcgcgccatgaaggaaggcgacatcgacctgcgctgccccaac
ggccgtacctgcccggcccagttgagagagcgcgtctcctacctcgcgggccgggagtgc
ctcgacatcgagcacttcggcaatgtggccgcggcggcgctgacccgtccgctggagccc
gccgccccaccgctcgtcgacgagggcgacctcttcgacctcacggtcgagcagctgctc
ccgatcaaggcgtacgtcctcgaccaggacagcggcctgcccaagcgggaccccaagacc
ggtgaggagaaggtcgtcacggtcttcgccaaccagaagggcgagccgaagaagaacacg
ctcgctctgctcgacaacatcgccgaggcgaagagccgcccgctcgcgcgcttcatcaac
ggactctccatcagacacgtcggcccggtggccgccgaggcgctggcccgcgagttccgt
tccatcgaccgcatcgagcaggccaccgaggaggaactcgccgcggtcgacggggtcgcc
gggatcatcgcgacctcggtcaagcagtggttcacggaggactggcaccgcgagatcatc
cgcaaatggaaggccgccggcgtccggttggaggacgagggttccggcgaggacgagggc
ccgcggcccctcgaaggactcaccgtcgtcgtcaccggcacgctcgaacaccacacgcgg
gacggcgcgaaggaggcccttcagagccggggagggaaggtgaccggttcggtctcgaag
aagacgtctttcgtggtcgtgggcgacaatccaggatctaagtacgacaaggcgatgcag
ctgaaggtgccggttctgaacgaggagggcttcgccgtcctgctcgaacagggaccggag
gccgccgcggaagtcgccctcccgaccggggagtag
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