Streptococcus sp. NPS 308: SNAG_0966
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Entry
SNAG_0966 CDS
T05541
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
strn
Streptococcus sp. NPS 308
Pathway
strn03030
DNA replication
strn03410
Base excision repair
strn03420
Nucleotide excision repair
strn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
strn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SNAG_0966 (ligA)
03410 Base excision repair
SNAG_0966 (ligA)
03420 Nucleotide excision repair
SNAG_0966 (ligA)
03430 Mismatch repair
SNAG_0966 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
strn03032
]
SNAG_0966 (ligA)
03400 DNA repair and recombination proteins [BR:
strn03400
]
SNAG_0966 (ligA)
Enzymes [BR:
strn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SNAG_0966 (ligA)
DNA replication proteins [BR:
strn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SNAG_0966 (ligA)
DNA repair and recombination proteins [BR:
strn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SNAG_0966 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SNAG_0966 (ligA)
MMR (mismatch excision repair)
DNA ligase
SNAG_0966 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SNAG_0966 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
RNA_lig_T4_1
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
BAV79841
LinkDB
All DBs
Position
938045..939991
Genome browser
AA seq
648 aa
AA seq
DB search
MNELVALLNRYATEYYTSDNPSVSDSEYDCLYRELVELEAAYPDQVLADSPTHRVGGKVL
DGFEKYSHQYPLYSLQDAFSREELEAFDARVRKELPHPTYICELKIDGLSISLTYEKGIL
VAGSTRGDGSIGENITENLKRVKDIPLTLPEKLDITVRGECYMPRASFELVNQARQENGE
PEFANPRNAAAGTLRQLDTAVVAKRNLATFLYQEASPSTRDSQEKVLKHLEQLGFVVNPK
RILAESMDEIWDFIQEVGQEREHLPYDIDGVVIKVNDLAGQEELGFTVKAPKWAVAYKFP
AEEKEAKLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYIAEKDIRKDDTVI
VYKAGDIIPAVLRVVESKRVSEEKLDIPTNCPSCDSQLLHFEDEVALRCINPRCPAQIME
GLIHFASRDAMNITGLGPSIVEKLFAANLVKDVADIYRLKEDDFLLLEGVKEKSASKLYQ
AIQASKENSAEKLLFGLGIRHVGSKASQLLLQHFHTIENLAQADPEEVASIESLGSVIAQ
SLQTYFATEGSKILLDELKEAGVNLDYKGQTVVADAALSGLTVVLTGKLERLTRSEAKSK
LESLGAKVTGSVSKKTDLVVAGADAGSKLQKAQELGIEVRDEAWLESL
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgaatgagttagttgccttacttaaccgctatgcgaccgagtactatacgagtgacaat
ccctcggtttcagatagtgagtatgattgcctctaccgagagttggtcgaattggaagcc
gcctatccggatcaagttttagcagacagtccaactcatcgtgttggtggtaaggtttta
gatggttttgaaaaatacagtcatcagtatcctctttatagtttgcaggatgctttttca
cgtgaagagttagaagcttttgatgcgcgtgtgcgaaaggaattacctcatcccacttat
atctgtgagttgaaaatcgatggtttgtctatctctcttacctatgagaaggggattttg
gtcgctgggtcgacgcgtggagatggttctattggtgagaatatcactgaaaatctcaaa
cgcgttaaggatattcctttgaccttgccagaaaaactagatatcacagttcgtggggag
tgttacatgccacgcgcttcctttgaattggtcaaccaagctcgccaagaaaatggagag
cctgaatttgccaatcctcgtaatgcggcggctggaactttgcgtcagctggatacagca
gtagttgccaagcgcaatcttgcgacttttctctatcaagaagcaagcccttctactcgt
gatagccaagaaaaagtcttgaagcatcttgaacaacttggttttgtagttaatcctaaa
cgaatcttggctgaaagcatggatgagatatgggattttatccaagaagtaggacaagaa
cgggaacatctaccttacgatattgatggagtggttatcaaagtcaatgacttagcaggt
caagaagaactcggttttacagttaaagcgcctaagtgggcagtggcctacaagttccct
gctgaggaaaaagaagccaaactactctcagttgactggacagtaggccgtactggggtt
gtcacgccaactgccaatttgacacctgttcagcttgctggtactaccgttagccgtgcg
accctacacaacgtagactatattgctgaaaaagatattcgcaaagacgatacggttatc
gtttataaggctggagatatcattcctgctgttttgcgtgtggtagagtccaagcgtgtt
tctgaagaaaaactagatattccgactaactgtccgagctgtgacagtcagttacttcat
tttgaagatgaggttgctctacgttgtatcaatcctcgctgtccagcccaaatcatggaa
ggcttgattcactttgcctctcgtgatgccatgaatattacaggccttggtccttccata
gttgagaagctctttgctgctaatctagttaaggatgtagcggatatttaccgtttgaaa
gaagatgatttcctccttttagaaggtgtcaaggaaaagtctgcgtcaaaactgtatcag
gctattcaagcatctaaggaaaactcagctgagaagcttttatttggcttgggaattcgc
catgtcggaagtaaggctagtcagctcttgctccaacatttccatacgattgaaaatctg
gctcaggcagatccagaggaagtggcaagtattgaaagcctgggtagcgtaatcgcccaa
agccttcagacttattttgctacagaaggatcgaagattcttttagacgagttgaaagaa
gctggagttaatctggactacaaagggcagacagtagtagcagatgcagccttgtcaggt
ttgacagttgtattaacaggaaaattggaacgtctcacgcgctcagaagccaaaagcaaa
ctcgaaagtctgggagctaaggtaacaggcagtgtatccaagaaaacagatctagtcgta
gcaggagcggatgcaggaagcaagctccaaaaagcgcaagaacttggtattgaagttcga
gatgaagcttggttggaaagtttgtaa
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integrated database retrieval system
