Streptomyces sp. PAMC 26508: F750_4988
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Entry
F750_4988 CDS
T02619
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
strp
Streptomyces sp. PAMC 26508
Pathway
strp03030
DNA replication
strp03410
Base excision repair
strp03420
Nucleotide excision repair
strp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
strp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
F750_4988
03410 Base excision repair
F750_4988
03420 Nucleotide excision repair
F750_4988
03430 Mismatch repair
F750_4988
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
strp03032
]
F750_4988
03400 DNA repair and recombination proteins [BR:
strp03400
]
F750_4988
Enzymes [BR:
strp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
F750_4988
DNA replication proteins [BR:
strp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
F750_4988
DNA repair and recombination proteins [BR:
strp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
F750_4988
NER (nucleotide excision repair)
GGR (global genome repair) factors
F750_4988
MMR (mismatch excision repair)
DNA ligase
F750_4988
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
F750_4988
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
Nlig-Ia
HHH
ILEI
Zn_ribbon_CLPX_N
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
AGJ57426
LinkDB
All DBs
Position
5181594..5183789
Genome browser
AA seq
731 aa
AA seq
DB search
MAGEQQAQQLTGVPAEVRERHALLAEQIEEHRFRYYVKDQPVVDDAEFDRQMRALEAIEH
EHPELRTPDSPTQKVAGPYTTEFTSVEHRERLLSLDNAFDDGELAAWAERVAKDVGGGGY
HFLCELKVDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPLRLKGDDIPALV
EIRGEVFFPMEAFEGLNARLVEAGDKPFANPRNAAAGSLRQKDPKVTATRPLHMVVHGIG
ARDGFGIDRLSQAYDLLREWGLPTARHNKVVESLDEVREFIAWFGENRQSVEHEIDGVVV
KLDEIPLQGRLGSTSRAPRWAIAWKYAPQEVNTKLVNIRVGVGRTGRVTPYAQVEPVEVA
GSEVEFATLHNQNVVKAKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGSEHAFVMPSECP
ECGTPLRPMKEADIDLRCPNARSCPAQLRERVAYLAGRKCLDIDHFGYVAAAALTRPLEP
EEPPLLDEGDLFGLTVEQLLPIRAYVLDPDSGLPKRDPRTGEEKIATVFANQQGEPKKNA
LGMLEGIAAARQAPLARILTGLSIRHVGPVAAVELARQFRSIERIDEASEAELAAADGVG
PIIAASVKQWFAEDWHREILRKWREAGVRMEDEGAGEDEGPRPLEGLTVVVTGTLAAHTR
DGAKDALQSLGAKVTGSVSKKTSFVVVGDNPGSKYDKAMQLKVPVLDEEGFAVLLEQGPD
AAREAAVPAEE
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atggccggcgaacagcaggcgcagcagctgaccggtgtgccggcggaggtgcgcgaacgg
cacgcgcttctcgccgagcagatcgaggagcaccgcttccggtactacgtgaaggaccag
ccggtcgtcgacgacgccgagttcgaccggcagatgcgcgcgctggaggccatcgagcac
gaacaccccgagctgcgcacaccggactccccgacccagaaggtcgcgggcccctacacc
acggagttcacctccgtcgaacaccgtgaacgcctgctctccctggacaacgccttcgac
gacggggagctcgccgcctgggccgagcgcgtggccaaggacgtgggcgggggcggatac
cacttcctgtgcgagctcaaggtggacggtctcgccgtcaacctgacctacgagcacggc
aggctcacgcgcgcggcgacccgcggtgacggccggacgggggaggacatcacccccaac
gtccgtacgatcgccgagatccccctgcgcctcaagggcgacgacatccccgcgctcgtc
gagatccggggcgaggtcttcttcccgatggaggccttcgaagggctcaacgcccggctg
gtcgaggccggcgacaagcccttcgccaacccgcgcaacgcggcggccggatcactgcgg
cagaaggacccgaaggtcaccgccacccgcccgctgcacatggtggtccacggcatcggc
gcccgcgacggcttcggcatcgaccggctctcccaggcctacgacctgctccgggaatgg
ggcctgcccaccgccagacacaacaaggtggtggagtcgctcgacgaggtccgggagttc
atcgcctggttcggcgagaaccgccagtccgtcgagcacgagatcgacggcgtcgtcgtc
aagctcgacgagatccccctgcagggcaggctgggctccacctcgcgcgcgccgcgctgg
gcgatcgcctggaagtacgccccgcaggaggtcaacaccaagctggtcaacatccgcgtc
ggcgtcggacgcaccggccgggtcacgccgtacgcccaggtcgagccggtcgaggtggca
ggctccgaggtcgagttcgccaccctgcacaaccagaacgtggtgaaggccaagggcgtc
ctcatcggtgacaccgtggtgctccgcaaggcgggcgacgtcatcccggagatcctcggc
ccggtcgtcgacctgcgggacggcagcgagcacgcgttcgtcatgccgtccgagtgcccg
gagtgcgggacgccgctgcgcccgatgaaggaggccgacatcgacctccgctgccccaac
gcacgctcttgccctgcccagttgcgggagcgcgtggcctatctggcgggccgtaagtgc
ctggacatcgaccacttcggctatgtggccgccgccgccctgacccgaccgctggagccc
gaggagccaccgctgctggacgagggggacctcttcggcctgacggtggaacaactgctg
cccatccgggcgtacgtcctggacccggacagcggactgcccaagcgtgacccgaggacg
ggcgaggagaagatcgccacggtcttcgccaaccagcagggcgagccgaagaagaacgcc
ctcggcatgctggagggcatcgcggcggccaggcaggccccgctcgcccggatcctcacc
gggctgtcgatccggcacgtggggccggtggccgccgtcgaactggcccggcagttccgg
tccatcgagcggatcgacgaggcctccgaggcggaactcgccgcggcggacggggtgggg
cccatcatcgccgcctcggtcaaacagtggttcgccgaggactggcaccgcgagatcctg
cgcaagtggcgggaggccggggtccgcatggaggacgagggcgcgggcgaggacgagggg
ccccggcccctggagggcctcaccgtcgtggtcaccggcacgctggccgcgcacacccgg
gacggcgccaaggacgccctccagagcctcggggcgaaggtcaccggctccgtctcgaag
aagacctccttcgtcgtggtcggcgacaacccggggtcgaagtacgacaaggcgatgcag
ctgaaggtgcccgtgctcgacgaggagggcttcgccgtcctcctcgaacaggggccggac
gccgcccgggaggccgcggtccccgccgaggagtga
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