Salmo trutta (river trout): 115148552
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Entry
115148552 CDS
T08542
Symbol
rapgef6
Name
(RefSeq) rap guanine nucleotide exchange factor 6 isoform X1
KO
K08020
Rap guanine nucleotide exchange factor 6
Organism
stru
Salmo trutta (river trout)
Pathway
stru04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
115148552 (rapgef6)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RasGEF
PDZ
RA
RasGEF_N
cNMP_binding
PDZ_6
RA_2
ABhydrolase-like_N
PDZ_2
Motif
Other DBs
NCBI-GeneID:
115148552
NCBI-ProteinID:
XP_029546389
Ensembl:
ENSSTUG00000039214
LinkDB
All DBs
Position
15:16025912..16157619
Genome browser
AA seq
1682 aa
AA seq
DB search
MTMTGSMETSFKQALKKPPSQRTTEDLHTVYCHLYHMDVLSHLREHQLRSMCTSARYERH
EANHVLFYQDSLATCWYILLSGSVFVKEHMYLARCCFGKQLGGRRGCECITLEPTEMIVV
DNASEVEERALQREASQRRSRRRFRKVNPRGERELITDGQEPTDYAYNQLPGDLNKMHLT
DHPHSQGMHVPPSQSGCSIASDSGSSSLSDIYQATESEMGDVDLSGLPEAAVDSEEEEEE
DEDLERTSDTLLGRDLVRECLEKDPVDRNDDDIEQLLEFMHQLPAFANMTMSVRRDLCTV
MVFEVVEQAGTTILKDKQELDLWYVILNGAVEISHPDSRMETLCMGNSFGISPSLDKQYM
SGVVSTKGDDCQFVCIAQEDYWRILNHVEKNTHKVEVEGEIVMVKEHRELDRSGTRKGHI
VIKGTPERLILHLVEEPSVVDPTYIEDFLLTYRTFLSSPMEVGKKLLEWFKVDSLRDTVT
RIVLLWVNNHFNDFEGDPAMTRFLEDFEKLLETTKMKGHLRLLNIACAAKAKWRQITLQK
PSRESPLYFSLHGGSERGFGIFVELVEGGSKAAEAGLKRGDQIMEINGQNFENISYVKAM
DFLRNNTHLSLTVKTNIFVFKELLSRIVHEKKNGVPHIPKIQEKKGNRFSISDLPGDMEF
PTDHKATKKMKANTVSGGRNKIRKMLEKTRFSILPPKPFSDGGVGQSQDDSIVGTKQCRH
SVAIMPIPGSLSSSSPDLLQPATNVLDFSNPAAVSFYYIPDQVIRVFKADQQSCYIIISK
DTTAKDVVSHVVNEFGLSAAPENYSLCEVSVSPEGVIKQRRLPDQLSKLADRIQLNGRYY
LKNNMDTETLCSDDDAQELLKESHITLLQLSTVEVAAQLSMRDFELFRNIESTEYVDDLF
KLLDSSGGVQQTRLKQFEEVINQETFWVATEILREPNAMKRMKTIKHFIKIALNCRECKN
FNSMFAIISGLNLAPIARLRSSWEKLPSKYDKLFRELQDIFDPSRNMAKYRNVLSSQSMQ
PPIIPLFPVVKKDLTFLHEGNDSKVDGLVNFEKLRMIAKEIRHVVRMTSANMDPALMFRQ
RKKRWKSLGSLSQGSTNSNMLDVQGGAHKKRVRRSSLLNAKKLYEDAQMARKVKQYLSNL
AVETDEEKHQIMSLQCEPVYSTLSKNLSERRSTKSDISPVSLRSALPGGKAQNRVSQVLQ
IQVPLYPQRKKSTAKDIHAAHNSSSPLVIKKPPSSQLSQSEDSPWSGKRSAEDTVSIVSS
LHSSPTISPQGSPRKVGGMAKPQHNSNSQMNMSGSSSSLTSEASTKAGTAGTRSYGIGYA
LMPAVKSDNLSDSSHSEISSRSSIVSNCSVDSMAAGPAEERHGTKTRDTTETPGTTTQLT
HTDSDCSQPSTSLLARGQVMRGSTFTSSTSTEELTPDHVSLDSVADSGRGSWTSCSSNSH
DSFQSLPVPLLGRPLTWDHLVPGGFRHTQLAGPIVEVEAGPAWVGVAGGPGAGSGGGEDA
KRLSRDSSELNQSRQSWASSSSLSDTYEGNYGTIKRRTAEGVSAAPGEGPDAPQSTDPIY
KMVTSSTEKGLIVYCVTSPTKDDRYRGPPPTPPGYQGLTLVDGQDGAPLRPPHLRPPDYS
VALQRSKLLQSPGGLVEARRLGVNLLHHESQGQSRPASVCLQGLGDSEDGTWRTTETSPS
QG
NT seq
5049 nt
NT seq
+upstream
nt +downstream
nt
atgacaatgactggatcgatggaaacttctttcaaacaagctttaaagaaacctccatca
caaaggacaacagaggacctgcacaccgtttactgtcacctctaccacatggatgtcctg
tcccacctcagggagcaccagctcaggtccatgtgtacctcagccaggtatgagagacac
gaagctaaccacgtcctgttctaccaagacagcctcgccacatgttggtacatcctcctc
tccggctcagtcttcgtcaaggagcacatgtacttggctagatgctgctttggcaagcag
ctggggggcaggcgaggctgtgaatgcatcactttggagccgacagaaatgatcgtggtg
gacaatgccagcgaggtcgaggagagggcgttgcagagggaggcatcccagagacgttcc
cgccgacgctttcgcaaagtcaacccccggggagagcgggaactgatcactgacggccag
gagcccacggattatgcgtataaccagcttcccggagacctcaacaagatgcaccttaca
gaccacccccacagccaggggatgcacgtgccgcccagccaatcaggatgcagcatcgcc
agtgattcgggcagcagtagcctatcagacatctaccaggccacggagagcgagatgggt
gacgtggacctgtctgggctcccggaggcggcggtggactctgaggaggaggaggaggag
gacgaagaccttgagaggacgtcggacaccctactgggtagagaccttgtccgggagtgt
ctggagaaggaccccgtggaccgcaacgatgacgacatcgaacaactgttggagttcatg
caccagctgccagcctttgccaacatgaccatgtcagtccggagggacctgtgtactgtc
atggtgtttgaggtggtggagcaggcggggaccacgatcctgaaggacaaacaggagctg
gacctgtggtatgtgatcctgaacggggcggtggagatcagccacccagacagccgcatg
gagaccctctgcatgggcaacagcttcggcatctccccctccctggacaagcagtacatg
agcggagtggtgagcaccaagggggacgactgccagtttgtgtgcatcgcccaagaggac
tactggcggatcctcaaccatgtggagaagaacacgcacaaggtggaggtggagggagag
atcgtgatggtgaaggaacatcgcgagctggaccgcagcggcaccaggaagggacacatc
gtcatcaagggcaccccagagcgtttgatattgcacctggtggaggagccatcggtggtt
gaccccacctacatcgaagacttcctcctcacctaccgcaccttcctctccagccccatg
gaggtcggcaagaagctgctcgagtggttcaaagtcgacagcctcagagacacggtgaca
cgcatagtgttgttatgggtgaacaaccatttcaacgactttgaaggtgacccagccatg
acaaggttccttgaagactttgagaagctgctggaaaccacaaaaatgaagggtcacctg
aggctactgaacatagcgtgtgcagccaaggccaagtggaggcagatcaccctgcagaaa
ccgtccagagagtccccgctctacttcagcctgcatggcggcagcgagaggggcttcggc
atcttcgtggagttggtggaagggggcagcaaggccgcggaggctggactcaaacgggga
gaccagataatggagatcaatggtcagaactttgagaacatctcctacgtcaaagctatg
gacttcctgaggaacaacacacacctctccctcacagtcaagaccaacatcttcgtgttc
aaagagctgctgagccggatcgttcacgagaagaagaatggcgttccgcacatccccaag
atccaggagaagaagggcaaccgcttctccatctctgacctgcctggagacatggagttc
cccacagaccacaaggccaccaagaagatgaaggccaacaccgtttctgggggacgaaac
aagatcaggaagatgctcgagaagacccgcttcagcatcctaccacctaaacccttcagt
gatggtggcgtgggccagtctcaggatgacagcatcgtgggcacgaagcagtgcaggcac
agcgtggccatcatgcccatccctggcagcctctcatccagcagccctgacctgctgcag
ccagccactaatgtgttggacttctccaatccagcagccgtgagcttctactacattcca
gaccaggtgatccgggtgttcaaggctgaccagcagagctgttacatcatcatcagcaag
gacaccacggccaaggacgtggtcagtcacgtggtcaacgagtttggcctgagcgcggcc
ccggagaactactccctctgtgaggtgtcggtcagtcccgagggcgtcatcaagcaacgc
aggctacctgaccagctctccaagctggctgaccgcatccagctcaacggcaggtactac
ctgaagaacaacatggatacggagacgctgtgttcagacgatgacgcccaggagctgctg
aaggagagtcacatcaccctgctccagctcagcaccgtggaggtggccgcccagctctcc
atgagggactttgagctgttccgtaacatcgagtccaccgagtacgtggacgacctcttc
aagctgctggactcctcggggggagtccaacagacgcgcctcaagcagtttgaggaggtc
atcaaccaggagaccttctgggtcgccacggagatcctgagggagcccaacgccatgaaa
aggatgaagaccatcaaacacttcatcaagatcgctctgaactgtagagagtgcaagaac
ttcaactccatgttcgccatcatcagtggtctgaatctggctccaatagctcgtctcagg
tcgtcgtgggagaagctgcccagtaagtacgacaagctattccgcgaactgcaggacatc
ttcgacccgtccaggaacatggccaagtaccgcaacgtcctgagcagccagagcatgcag
ccgcccattatccccctgttccccgtcgtcaagaaggacctcaccttcctacatgaaggt
aatgactctaaagtagacggtctggtgaacttcgagaagctgaggatgatcgccaaggag
atccgtcatgttgtccgtatgacctcagccaacatggacccagctcttatgttccgacag
aggaagaagaggtggaagagtttagggtctctgagtcagggcagcaccaactccaacatg
ttggacgtgcagggcggggcccacaagaagcgcgtgcgtcgcagctcgctgctcaacgct
aagaagctgtacgaggacgctcagatggcccgtaaggtcaagcagtacctgtccaacctg
gcggtggagacggacgaggagaaacaccagattatgtctctacagtgtgagcctgtttac
agcacattgtccaagaacctgagcgagcgccggtccaccaagtcggacatatctcctgtg
tcgctgcgctcggcgctgcccggggggaaggcccagaaccgcgtgtcccaggtgctacag
atccaggtacccctctacccgcaacggaagaagagcaccgccaaggacattcacgccgca
cacaactccagctctccccttgtgataaagaagcctcccagctcccagctcagccaatca
gaggacagtccctggagtgggaagaggtctgctgaagacaccgtgtccatcgtgtcctcc
ctgcactccagccccaccatctcgccacagggctccccgcgcaaagtgggtggcatggcc
aagccccagcataactccaacagccagatgaacatgtctggctcgtcgtcctctctgacc
agcgaggccagcaccaaggcaggcacggcgggaacccgcagctacggcataggctatgcc
ctgatgcctgcagtgaaatccgacaacctgtccgactccagccacagtgagatctcgtcc
cgctccagcatcgtcagtaactgctctgtggactcaatggctgctggccctgcagaggag
cgccacggcaccaagaccagggacaccactgagaccccaggcaccaccacgcagctcaca
cacaccgactctgactgcagccagcccagcaccagtttgttggcgcggggccaggtgatg
cggggttccaccttcacctcctccacctccacagaggagctgactcccgaccacgtctcc
ctggacagtgtggccgacagcgggcggggcagctggacctcctgctcctccaactcccac
gacagctttcagagcttgcctgtccccctgctgggccgacccctcacctgggaccaccta
gtgcctgggggcttccgccacacccagctagcagggcctatagtggaggttgaggctggg
ccggcctgggttggggtagcgggaggaccgggggcggggtccgggggaggagaggacgcc
aagaggctctccagagacagttccgagctaaaccaatcacggcagagctgggcctcgtcc
tcctcgctgtcggacacctacgaggggaactacggcaccatcaaacgccgcactgccgaa
ggcgtctccgccgcccctggggagggccctgacgcacctcaaagcacagatcccatctac
aaaatggtcacctcaagcacagagaaaggcctcatagtgtactgtgtaacctcccccacc
aaggacgataggtacagggggcctccccccactcctccgggataccagggcctcaccctg
gtcgatggacaggatggagctcccctgcgaccgccccacttgcggccgcctgactatagt
gtggccctgcagaggtctaagctgctacagagccccggaggcctggtggaggcccggaga
ctgggggtgaacctcctccaccacgaatcccagggccagtcccggccggccagcgtctgc
ctacagggcctaggggatagtgaggatggtacgtggagaacgacagagaccagccccagc
caaggttaa
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