Salmo trutta (river trout): 115162365 Help Entry 115162365         CDS       T08542                                  Name (RefSeq) thrombospondin-1-like   KO K16857   thrombospondin 1 Organism stru  Salmo trutta (river trout) Pathway stru04115   p53 signaling pathway stru04145   Phagosome stru04148   Efferocytosis stru04350   TGF-beta signaling pathway stru04510   Focal adhesion stru04512   ECM-receptor interaction stru04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:stru00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     115162365   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     115162365  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     115162365    04148 Efferocytosis     115162365   09143 Cell growth and death    04115 p53 signaling pathway     115162365   09144 Cellular community - eukaryotes    04510 Focal adhesion     115162365   09142 Cell motility    04820 Cytoskeleton in muscle cells     115162365  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:stru04131]     115162365   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:stru00536]     115162365 Membrane trafficking [BR:stru04131]  Endocytosis   Phagocytosis    Opsonins     115162365 Glycosaminoglycan binding proteins [BR:stru00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    115162365 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC TSP1_CFP_C EGF_3 TSP1_ADAMTS cEGF Laminin_G_3 EGF TSP1_CCN Laminin_G_2 Motif Other DBs NCBI-GeneID:  115162365 NCBI-ProteinID:  XP_029569456 Ensembl:  ENSSTUG00000029059 LinkDB All DBs Position 25:complement(29578898..29589278) Genome browser AA seq 1172 aa AA seqDB search MKLTGVFLLLVLWNCEGSRVAESRDDNSVYDLFELVKVNKRHQGVTLVKGADPYSPAYKI LNADLIPPVPEISFRDLIDSIQAERGFLLLVNFKQFKKTRGSLLTVEKDDGSGPLFEIIS NGKAQTLDVVYSTGNKQQVVSIEDADLATGHWKNITLFIQEDRAQLFVGCEEINISEMDV PIQKVLTHEVADIARLRIGKGAVKDRFMGVLQNVRFVFGTTLEAILRNKGCQSSVTLTDV MTLDNPVNGSSPAIRTDYTGHKTKDIQQVCGFSCEDITSMFKELKGLGVIVKQLSNELNR VNKESTLLMNQMNIHRGVCLHNGIVHKDKDEWTVDDCTECTCQNSATVCRKISCPLMPCA NATVPDGECCPRCGNPNNYAEDGWSPWSEWTHCSVSCGRGIQQRGRSCDRINSNCEGTSV QTRDCYPQECDKRFKQDGGWSHWSPWSSCSVICGEGVITRIRLCNSPTPQMGGRDCQGQG RETEVCQESPCPINGGWGPWSLWDTCSVTCGGGLQTRQRLCNNPAPKYKGKECQGDTKTS QLCGKEDCPINGCLSNPCFAGAKCTSFDDGSWKCGACPVGYTGDGINCKDIDECKEVPDA CFTLNGVQRCENTEPGYNCLACPPRYSGPQPFGRGVEQATAKKQVCTPRNPCQDGSHDCN KNANCIYLGQFSDTMFRCECKPGYAGNGHICGDDTDLDGWPNKDLLCVENATYHCKKDNC PNLPNSGQEDHDKDGLGDACDHDDDNDGIPDDRDNCPMVYNPAQYDVDTDDVGDRCDNCV HESNPDQVDTDNNGEGDACAIDIDGDGILNERDNCPYVYNVDQRDTDGDGVGDHCDNCPL EHNPDQIDSDSDRVGDKCDNNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHDD DNDGIPDDKDNCRLAFNPDQVDSDGDGRGDVCKDDFDQDNILDIYDVCPENFAISETDFR RFQMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGFDEFNAVDFSGTFFINTDR DDDYAGFVFGYQSSSRFYVVMWKQITQTYWSHTPTRAQGYSGVSIKVVNSTTGPGEHLRN ALWHTGDTAEQVRTLWHDPKNIGWKDYTAYRWHLVHRPKSGLIRVVMYEGKRIMADSGNI YDKTYAGGRLGMYVFSQEMTYFSDLKYECRDS NT seq 3519 nt NT seq  +upstreamnt  +downstreamnt atgaagctgacaggagtctttctccttttggtgctttggaattgtgagggcagcagggtg gcagagagtagagatgataacagtgtatacgacctattcgagcttgtgaaagtgaataaa aggcaccaaggagttaccttggtaaaaggcgcagatccttacagcccagcctataagatc ctgaacgcagacctgatccccccggttcccgagatctccttcagggacctcatcgattcg atacaagctgagaggggattccttctcctggtcaacttcaagcagttcaagaaaaccagg ggtagtcttttgactgtggagaaggatgacggatcaggaccgttattcgaaataatttct aatggcaaggcgcaaactctggatgtggtatactccaccgggaacaagcaacaggtagtg tccatagaagatgcggatctagcgactggacactggaagaatatcacactgttcattcag gaggatcgtgcccagctgttcgtcgggtgtgaagagatcaatatatcagaaatggatgtg cccattcaaaaggtcctgacgcatgaggttgccgacattgcccgtctgaggatcggaaaa ggagctgtgaaagatagatttatgggagtgcttcagaacgtgcgcttcgtttttggaacc actttggaggcgattttacgcaataagggatgccaaagctctgtaactttgactgatgtc atgacactggacaacccagtaaatgggtccagcccagcaataaggactgattacactggc cacaaaactaaagatattcagcaggtctgtggtttttcctgtgaggatatcactagcatg ttcaaggagctcaagggacttggtgtgattgttaagcagctgtcaaatgagctcaacaga gtgaataaggagagcactctgctcatgaaccagatgaacatccacagaggggtctgtctt cacaacggcattgtgcacaaggacaaagatgagtggactgtggacgactgcacagagtgt acctgccagaactctgccactgtgtgtcgcaaaatctcttgccccctgatgccctgtgcc aacgccaccgtgcctgatggagagtgctgcccacgttgtggaaacccgaataactatgct gaggatggctggtccccctggtctgaatggacccattgttctgtgtcttgtggacggggt atccagcagcgaggtcgctcctgtgaccgcatcaacagtaactgcgaaggcacttctgtg cagacccgcgactgctaccctcaggaatgtgacaagcgctttaagcaggatggtggctgg agccactggtctccctggtcctcctgctctgtgatctgtggtgagggagtcatcacccgc atccgcctctgcaactcccccactccccagatgggaggcagagactgtcaaggacagggc cgagagacagaggtttgccaggaatcaccttgtccaattaacggaggctggggaccctgg tctctgtgggacacctgctctgtcacctgtggaggtggactccagactcgccagcgtctc tgtaacaaccccgcccccaagtacaaagggaaggaatgtcagggtgacaccaaaacatcc caattgtgtggcaaagaggactgccctatcaatggctgtctgtccaacccgtgctttgct ggcgctaagtgtaccagctttgatgatggttcctggaagtgtggcgcatgcccagtgggc tacaccggagacggcatcaactgcaaggacatcgacgagtgcaaggaggtccctgacgcg tgcttcacactcaacggagtccaacgctgtgagaacactgagcctggctacaactgcctt gcttgccccccccgctactcaggaccacagcccttcgggaggggagtggagcaggccaca gccaagaaacaggtgtgcacaccccgtaacccctgccaagatggcagccatgattgcaac aagaatgctaactgtatctacctgggtcagttcagcgacaccatgttccgctgtgagtgc aaacctggttacgctggcaatggccacatctgtggagatgacaccgacctggatggatgg cccaacaaagacctcctgtgtgtggagaacgccacctaccactgcaagaaagacaactgt ccaaaccttcccaactctgggcaggaggaccatgacaaagatgggcttggtgacgcttgc gatcacgatgatgacaatgatgggatccctgatgatagggacaactgcccaatggtctac aaccccgctcagtatgatgtggacacagatgacgttggtgatcgctgtgataactgtgtg catgagagcaaccccgaccaagtcgacacagacaacaacggagagggagatgcctgtgct attgacattgacggtgatggtattctaaatgagagggataactgcccctatgtctacaat gtggaccagagagacactgacggggacggagtgggagaccactgcgacaactgccctctt gagcataacccagaccagattgactctgactcagatcgtgtgggagacaagtgcgacaac aaccaggacattgatgaggacggtcatcagaacaacttggacaactgtccctatatcccc aacgccaaccaggccgaccacgacaaagatggcaagggtgacgcctgcgaccacgatgac gacaacgacggtatccctgacgacaaggacaactgcaggctggcctttaaccctgaccag gtggactctgatggtgatggtcgtggagatgtttgcaaagatgactttgaccaagacaac atacttgatatctacgatgtgtgccctgagaactttgccatcagcgagacagacttccgc aggttccagatggtaccactggaccccaagggcacctcccagatcgaccccaactgggtg gtccgccaccagggcaaagagctggtgcagactgtcaactgtgaccctggcatcgctgtt gggttcgatgagtttaatgcagtggacttcagtggaacgttcttcatcaacacagacagg gatgatgactacgctggctttgtgtttggctaccagtccagctccaggttctatgtggtg atgtggaagcagatcacacagacctactggtcccacaccccgaccagagctcagggctac tccggagtgtccatcaaagtagtcaactccaccacaggacctggggagcatctgaggaac gccctttggcacactggtgacactgctgaacaggtgcgtactctgtggcacgaccccaag aacattggctggaaagactacaccgcctacagatggcacctggtccacaggcccaagtct ggactcatcagagttgtgatgtatgaaggcaagagaatcatggcggattctggaaatatc tacgacaagacttatgctggtggaagactaggcatgtatgtcttctctcaggagatgaca tacttctcagacctcaaatacgaatgcagagattcttaa

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