Salmo trutta (river trout): 115162648
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Entry
115162648 CDS
T08542
Name
(RefSeq) interferon regulatory factor 3-like isoform X1
KO
K05411
interferon regulatory factor 3
Organism
stru
Salmo trutta (river trout)
Pathway
stru04620
Toll-like receptor signaling pathway
stru04621
NOD-like receptor signaling pathway
stru04622
RIG-I-like receptor signaling pathway
stru04623
Cytosolic DNA-sensing pathway
stru05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
115162648
04621 NOD-like receptor signaling pathway
115162648
04622 RIG-I-like receptor signaling pathway
115162648
04623 Cytosolic DNA-sensing pathway
115162648
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
115162648
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
stru03000
]
115162648
04131 Membrane trafficking [BR:
stru04131
]
115162648
Transcription factors [BR:
stru03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters interferon-regulating factors
115162648
Membrane trafficking [BR:
stru04131
]
Autophagy
Other autophagy associated proteins
TRIM-directed selective autophagy
115162648
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IRF-3
IRF
Motif
Other DBs
NCBI-GeneID:
115162648
NCBI-ProteinID:
XP_029570001
Ensembl:
ENSSTUG00000012438
LinkDB
All DBs
Position
2:72629889..72654133
Genome browser
AA seq
471 aa
AA seq
DB search
MSQSKPLLIPWLRGQINSGQYPGVTWTNQERTEFCIPWKHALRQDSCSDDVLIFKAWAEV
SNGRVQGDPSIWKRNFRSALRAKGFKMLLDNKNDAANPNKLFQWPDEAPTGGEAPTGGSQ
HPEHDLYQDPSPLQESDGLPCANDLYLAAEETVYTAEGISTTFNQDILQKCLQGLNIEQT
EAIRGYELTVEQRQYPMEGAIGGHVLQGQQQYPVVMEDAVGGAVLPPQPVYPMDGPVGGA
HEQQVVEQFTNELSRTMVGENFKTHFRVSVYYRGVKMLEQLVENEAGFRLVYRPELTQPL
LDPDSGLNLVSLPSPPPVRDETQAKLTQGILALLGEGLEVGASGPIIYGLRKGGIKAFWS
LDKFDKSRKPQAVSKFPEPLYQAKDFYGGLLKFMENHRGECPPFSLFFCLGEKWPDPDNR
PWEKKLVMVEVVLTALELLKSIAVEGGASSLQSVELQLSLQESLQEMMDLC
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgtctcaatccaaaccgctcctaatcccttggctgcgcggacagataaatagtggccag
tatccaggggttacctggaccaatcaggagcgaacagagttctgcatcccttggaaacat
gctttaaggcaggattcctgcagcgatgatgtacttattttcaaggcgtgggctgaggtt
agcaatggtagggttcaaggcgacccctccatttggaagagaaacttccgttctgccctc
cgagccaaggggttcaaaatgctccttgacaacaaaaatgatgcagccaaccccaacaaa
ctgttccagtggccagatgaggcacccacgggaggtgaggcaccaacgggaggatctcag
cacccagaacatgatctgtatcaagatcccagtccattacaagaaagtgatggtctacca
tgtgcgaatgacctttaccttgcagcagaagaaactgtatacacagcagaggggatctca
accactttcaaccaggatatacttcagaaatgtctgcaagggttgaacattgaacaaaca
gaggctattcggggttatgaactcaccgtcgagcaacggcaatatccaatggagggcgcg
attggagggcatgttttgcaagggcaacagcagtatccggttgtaatggaggatgctgtg
ggaggagccgtgttgcccccgcaaccggtgtatccaatggatggacccgttggcggtgcc
catgaacagcaggtggtggagcagttcacaaatgaattgtccagaaccatggtgggcgaa
aattttaagactcacttcagggtttctgtgtactaccggggagtgaagatgcttgagcag
ctggttgagaacgaggcagggttcagattagtctacagacctgaacttacacaaccgctt
ctggacccagactctggcctgaatctggtctctctgcccagtccaccgcctgtccgggac
gaaactcaggccaaactgacccaaggtatcctggctctcctgggagagggcctggaggtg
ggtgcctccgggcccatcatctacggactccgtaagggtggaattaaggccttctggagc
cttgacaagtttgacaagagcaggaagccccaggcagtgtccaaattcccggaaccacta
tatcaggccaaggacttctatggagggctgttgaagttcatggaaaatcatagaggagaa
tgtccccccttttctctattcttctgtctgggagagaagtggccagacccggacaacaga
ccctgggagaagaaactggtcatggtcgaggtggtgttaaccgctctggagctactgaag
tcaatagcggtggaaggtggtgcctcatctctgcagtctgtggaactgcagctgtccttg
caggagtccctgcaggagatgatggacttgtgctaa
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integrated database retrieval system
