Salmo trutta (river trout): 115165920
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Entry
115165920 CDS
T08542
Symbol
tardbp
Name
(RefSeq) TAR DNA-binding protein 43 isoform X1
KO
K23600
TAR DNA-binding protein 43
Organism
stru
Salmo trutta (river trout)
Pathway
stru03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115165920 (tardbp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stru03019
]
115165920 (tardbp)
Messenger RNA biogenesis [BR:
stru03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
115165920 (tardbp)
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Ortholog
Paralog
GFIT
Motif
Pfam:
TDP-43_N
RRM_1
TDP-43_C
RRM_7
RRM_PARP14_3
RRM_3
RRM_11
Motif
Other DBs
NCBI-GeneID:
115165920
NCBI-ProteinID:
XP_029575287
Ensembl:
ENSSTUG00000038583
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All DBs
Position
28:complement(26956300..26960820)
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AA seq
393 aa
AA seq
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MAELYIRVGEDENEEPMEIPSEDDGTVLLSTVAAQFPGACGLRYRSPASQCMRGVRLVEG
ILHAPENDWGSLVYVVNYPKDNKRKMDEMDAVSAVKMKRGIDRTSDLIILGLPWKTSEQD
LKDYFATFGEVIMVQVKRDVKTGNSKGFGFVRFTEYETQSKVISQRHMIDGRWCDCKLPN
SKTGPDEPMRNCKIFVGRCTEDITTDELRQFFMQYGEVTDVFIPKPFRAFAFVTFSDDQV
ASALCGEDLIIKGVSVHISNAEPKHNNSRQMMDRGAGGFGGQGYGGGRGGLPSSGSSGVN
FGGFSLNPAMMAAALQSMLANQQGQTNVAGAVAAGQTSATGDQSQAYSSSSTSYSSPSSA
SLGWAAGTNSASGSGFSSGFGTSMESKSSGWGM
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atggcagagttgtacattcgcgtgggtgaggatgaaaacgaagagccaatggagatccca
tctgaggatgatggcactgttttgctgtcaacagtagcagcccagtttcccggggcgtgc
ggcctacgttacaggagccctgcgtctcagtgcatgcgaggcgtccgtctagttgagggc
atcttgcatgcacctgagaatgactggggtagtctggtgtacgttgtcaactacccaaaa
gataacaaaaggaagatggatgaaatggatgctgtctctgccgtaaaaatgaagagaggt
attgatagaacatcagacctcattatccttgggttgccatggaaaacatctgagcaagat
ttgaaagactacttcgccacttttggagaagtcatcatggtgcaggtcaaaagagatgtc
aagactgggaactcaaaggggtttggctttgttcggttcactgagtatgagactcaatcc
aaagtgatttctcagcgacacatgatcgatggaagatggtgtgactgcaaactaccaaac
tctaagacagggcctgatgagcccatgcgcaactgtaaaatctttgttggccgctgcaca
gaggacattaccactgatgagctccggcagttctttatgcagtatggcgaggtcaccgac
gtcttcattcccaaacccttccgggcgtttgcctttgtcactttctcagatgaccaggtt
gcctcagcattgtgcggagaggacctgatcatcaagggtgtcagcgtgcacatctccaac
gccgagcctaagcacaataatagtaggcaaatgatggatcgtggggctggtgggttcggg
ggtcagggctatggcggtggtcgtggagggctaccaagcagtggcagtagcggggtgaat
tttgggggctttagccttaacccagccatgatggccgccgctctgcaaagtatgctggct
aaccagcagggtcagaccaatgtggcaggcgccgtcgccgccgggcagacaagtgccacc
ggagatcaaagccaagcctatagttctagcagcaccagttacagcagccccagctcagct
agtcttgggtgggctgcaggcactaactctgcctccggcagtgggttcagctctggcttt
ggcacctctatggagtcaaagtcatcaggttggggaatgtag
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