Salmo trutta (river trout): 115171355
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Entry
115171355 CDS
T08542
Name
(RefSeq) low-density lipoprotein receptor-like isoform X1
KO
K12473
low-density lipoprotein receptor
Organism
stru
Salmo trutta (river trout)
Pathway
stru03272
Virion - Hepatitis viruses
stru04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03272 Virion - Hepatitis viruses
115171355
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
115171355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
stru04131
]
115171355
Membrane trafficking [BR:
stru04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
115171355
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_a
Ldl_recept_b
FXa_inhibition
cEGF
EGF_CA
SGL
Psg1
Motif
Other DBs
NCBI-GeneID:
115171355
NCBI-ProteinID:
XP_029583951
Ensembl:
ENSSTUG00000004443
LinkDB
All DBs
Position
32:20140992..20151607
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AA seq
880 aa
AA seq
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MGRLLCVLLVFLACCVVQTNAETVCGSRQFQCGNGKCITQRWVCDDTDDCGDGTDELPGT
CLARTCRTTEFSCGGHLNQCVPSTWLCDGKADCENGADEESCAPKHCTDNKFRCSNGQCV
SASFVCDEELDCDDGSDEASCPPSTCSSTSFQCNNSACVPRLWACDGDADCSDGSDEWPQ
NCGTRAPEGAPKPCSLREFQCGSGECIHSSWKCDGGFDCLDRSDETNCSRLTCRPDEFQC
GDGTCIHGGRQCNRQYDCRDLSDEIGCVNVSHCKGPTRFKCRSGECISMEKVCDKQRDCR
DWSDEPLRECDSNECLYNNGGCSHICNDLKIGYECQCPTGYYLTDKKRCEDIDECANPDI
CSQICVNHMGSYKCECEEGYQVDPATKACKAIGTVAYLFFTNRHEVRKMTLDKSEYTCVI
PRLKNAVALDMNMVAKEIYWSDLSQKKIYSTSMDLAADTAQHKVVIDSDIEAPEGIAFDW
VHGNIYWTDSILSSISVSTANGSRRKTLFQNDLAKPRAIVVDPHSNFMYWTDWGTPAKIE
KGGLNGGDRAALVTDDIVWPNGITLDLLNQRLYWVDSKLHTLSSINVQGGGRRTLIIDEH
RLAHPLGITVFEERVFWTDVSNNAILSANRVTGRDIKPVAEHLVSPEDIVLYHNLKQPTG
RDWCKVANGGCEFMCLAAPQVGIHSPKYTCACPDNMLLAKDMRKCVPAAPTPAAPVKPIV
PASNPPPAPAHTSPAPPARATTKAPIIATTVTPAPPRTTKPVPRNPQPAQPDRPRIPQAQ
TTTMPQVTTQDIRHEFAAIPTAHSTPAALYIALPIAIVCLVVFGAMLLWRNYRLKNTNTI
HFENPVYQKTTEDQVHICRSHSPDGYSYPPRQIVSLDDEA
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
atggggcggctgctgtgcgtgctgttggtgttcctggcttgctgtgttgtccaaacaaac
gcagagacagtatgtgggagcaggcagttccagtgtgggaacgggaagtgcattacgcag
agatgggtgtgtgatgacacagatgattgtggagatggaactgatgagctccccggaacc
tgcttggccagaacatgcagaaccacagagtttagctgtggtggtcatctgaaccagtgt
gttcccagtacctggctctgtgacggcaaagcagactgtgagaatggagctgatgaggag
agctgtgcgcccaagcactgcacagataacaaattccgctgcagtaacggccagtgtgtg
tcggcctcctttgtgtgtgatgaggagttggactgtgatgacgggagcgatgaggcttcc
tgcccacccagcacctgtagctccacctccttccagtgcaacaactctgcgtgtgtgccg
cgcctgtgggcctgcgacggggacgctgactgctcggatggctccgacgagtggccccag
aactgtgggacgcgagcccctgagggtgcccccaagccctgctcccttcgggagttccaa
tgtggcagcggggagtgtatccacagcagctggaaatgtgatggagggttcgactgcctg
gatcgctctgacgagaccaactgtagccgcctcacctgccgccccgatgagttccaatgc
ggtgatggcacctgtatccacggcggccgccaatgtaaccgccagtacgactgcagagac
ttgagtgatgaaataggctgtgtcaatgtgagccattgcaagggtcccaccaggtttaag
tgccgtagtggggagtgcatcagcatggagaaggtgtgtgacaagcagcgtgactgcagg
gactggtcagatgagcctctcagagagtgtgattccaacgagtgcctgtacaacaatggc
ggctgctcacacatctgcaatgacctgaagatcggctatgagtgccaatgccccaccggc
tactacctgacggacaagaaacgctgtgaagatatcgatgagtgtgccaacccagacatc
tgcagccagatctgtgtcaatcatatgggcagctacaagtgcgagtgtgaggagggctac
caggtcgacccagccaccaaagcctgcaaggccatcggcactgtagcctatctgttcttc
accaatcgccatgaggtgaggaagatgacactggacaagagtgagtacacgtgtgtcatc
ccccgcctgaagaatgcagtagctctggacatgaacatggttgccaaggagatttactgg
tctgacctctcccagaagaagatctacagcacctcaatggacttggctgcagacacagcg
caacacaaagttgtgattgacagcgacatcgaagctccggagggcatcgcctttgactgg
gtccacggcaacatctactggaccgacagtatcctcagcagcatctccgtgtcaaccgcc
aacgggagccgccgcaagactctcttccagaatgacctggccaagccccgcgctattgtg
gtcgacccccacagcaacttcatgtactggactgactggggaactccagccaagattgag
aagggaggtctgaacggaggagaccgcgctgctctggtcacagacgacattgtgtggccc
aatggaatcacacttgacctgctgaaccagaggctgtactgggtggactccaagctgcac
accctctccagtatcaacgtccagggtggtggccgaaggacactcattatagatgaacac
aggctagctcatcccctaggcatcactgtgtttgaggaaagagtgttttggacagatgtc
agcaacaatgccattctgagtgccaaccgtgtgacaggcagggacatcaagcctgtggca
gagcatctggtatccccagaggacattgtgttgtaccacaacctcaaacagccaactggc
agggactggtgcaaggtggccaacggaggctgtgagttcatgtgtctggcagccccccag
gtgggcatacattcccccaagtacacctgtgcatgccctgacaacatgctgctggccaaa
gacatgaggaaatgtgtaccagctgcaccaacacctgcagctccagtcaagcccattgtt
cccgcctccaatcccccaccggcacccgcccacacctcccctgcacctccagcccgcgcc
accactaaggcccccatcatcgctaccacagttacgcctgcgcctccccgcactaccaag
cctgtgccacgcaacccccagcctgcccagccagatagacccaggatcccccaggcccag
actaccacaatgcctcaagtcaccactcaggacatccgccatgaatttgctgctataccc
acagcccattcaacccctgcagctttatacatcgcgctgcctatagccattgtgtgtctg
gtggtctttggtgccatgctgctgtggaggaactacaggctgaagaacactaacaccatt
cactttgaaaacccagtctaccagaaaaccactgaagaccaggtccacatatgcaggagc
cacagtccagacggctactcctacccaccaagacagattgtgagtcttgatgatgaggct
tga
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