Salmo trutta (river trout): 115172646 Help Entry 115172646         CDS       T08542                                  Name (RefSeq) thrombospondin-1-like   KO K16857   thrombospondin 1 Organism stru  Salmo trutta (river trout) Pathway stru04115   p53 signaling pathway stru04145   Phagosome stru04148   Efferocytosis stru04350   TGF-beta signaling pathway stru04510   Focal adhesion stru04512   ECM-receptor interaction stru04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:stru00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     115172646   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     115172646  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     115172646    04148 Efferocytosis     115172646   09143 Cell growth and death    04115 p53 signaling pathway     115172646   09144 Cellular community - eukaryotes    04510 Focal adhesion     115172646   09142 Cell motility    04820 Cytoskeleton in muscle cells     115172646  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:stru04131]     115172646   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:stru00536]     115172646 Membrane trafficking [BR:stru04131]  Endocytosis   Phagocytosis    Opsonins     115172646 Glycosaminoglycan binding proteins [BR:stru00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    115172646 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC TSP1_ADAMTS EGF_3 TSP1_CFP_C cEGF TSP1_CCN EGF Laminin_G_2 Motif Other DBs NCBI-GeneID:  115172646 NCBI-ProteinID:  XP_029586159 Ensembl:  ENSSTUG00000028590 LinkDB All DBs Position 33:complement(21408836..21419383) Genome browser AA seq 1172 aa AA seqDB search MKPTGVFLLLVLWNCEGSRVAEIGDDNGVYDLFELVKVNKRHQGVTLVKGADPYSPAYKV LNADLIPPVPEISFRDLIDSVQAERGFLLLVNFKQFKKTRGSLLTVEKNDGSGPIFEIIS NGKAQTLDVVYSTGNKQQVVSIEDADLATGHWKNITLFIQEDRAQLFVGCEEINISEIDV PIQKVLTHEVADIARLRIGKGAVKDKFMGVLQNVRFVFGTTLEAIMRNKGCQSSGTLTDV MTLDNPVNGSSPAIRTDYTGHKSKEIQQVCGFSCEDITSMFKELKGLGVVVKQLSNELNR VNKESTLLMNQMNIHRGVCLHNGIVHKDKDEWTVDGCTECTCQNSATVCRKISCPLMPCA NATVPDGECCPRCGTPSDYAEDGWSPWSEWTHCSVSCGRGIQQRGRSCDRINSNCEGTSV QTRDCYPQECDKRFKQDGGWSHWSPWSSCSVTCGEGVITRIRLCNSPTPQMGGRDCQGQG RETEVCQKSPCPIDGVWGPWSLWDTCSVTCGGGFQTRQRLCNNPTPKYGGKECQGDGKTS QLCGKEDCPIDGCLSNPCFAGAKCSSFDDGSWKCGACPVGYTGDGINCKDIDECKEVRDA CFTLNGVHRCENTEPGYNCLACPPRYSGQQPFGRGVEQATAKKQVCTPRNPCQDGSHDCN KNANCIYLGQFSDTMFRCECKPGYAGNGHICGDDTDLDGWPNKDLLCVENATYHCKKDNC PNLPNSGQEDHDKDELGDACDHDDDNDGIPDDRDNCPMVYNPAQYDVDRDDVGDRCDNCV HESNPDQVDTDNNGEGDACAIDIDGDGILNERDNCPYVYNVDQRDTDGDGVGDHCDNCPL ENNPDQIDSDSDRVGDKCDNNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHDD DNDGIPDDKDNCRLAFNPDQLDSDGDGRGDVCKDDFDQDNILDIYDVCPENFAISETDFR RFQMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGFDEFNAVDFSGTFFINTDR DDDYAGFVFGYQSSSRFYVVMWKQITQTYWSHTPTRAQGYSGVSIKVVNSTTGPGEHLRN ALWHTGDTAGQVRTLWHDPKNIGWKDYTAYRWHLIHRPKSGLIRVVMYEGKRIMADSGNI YDKTYAGGRLGMYVFSQEMTYFSDLKYECRDS NT seq 3519 nt NT seq  +upstreamnt  +downstreamnt atgaagccgacaggagtatttctccttttggtgctttggaattgtgagggcagccgggtg gcagagattggagatgataacggtgtatacgacctattcgagcttgtgaaagtgaacaag aggcaccaaggagttaccttggtaaaaggcgcagatccctacagcccagcctataaggtc ttgaacgcagacctgatccccccggttcccgagatctccttcagggacctcattgattca gtacaagctgaaagaggattccttctcctcgtcaacttcaagcagttcaagaaaaccagg ggtagtcttttgactgtggagaagaatgacggatcaggaccgatattcgaaattatttct aatggcaaggcgcaaactctggatgtggtatactccaccgggaacaagcaacaggtagtg tccatagaagatgcagatctagcgacaggacattggaagaatatcacgctgttcattcag gaagatcgtgcccagctgttcgtaggatgtgaagagatcaatatatccgaaatagacgtg cccattcaaaaggtcctgacgcatgaggttgcggacattgcccgtctgagaattggaaaa ggagctgtgaaagacaaatttatgggagtgcttcagaacgtgcgctttgtttttggaacc actttggaggcaatcatgcgcaataagggatgccaaagctctggaacattgactgatgtc atgaccctagacaacccagtcaatgggtctagcccagcaataaggactgattacactggc cacaaaagcaaagaaattcagcaggtctgtggcttttcctgtgaggatatcaccagcatg ttcaaggagctcaagggactcggcgtggttgttaagcagctgtcaaatgagctcaacaga gtgaataaggagagcactctgctcatgaaccagatgaacatccacaggggggtctgtctt cacaacggcatcgtgcacaaggacaaagatgagtggaccgtggacggctgcacagagtgt acctgccagaactctgccactgtgtgtcgcaaaatctcttgccccctgatgccctgtgcc aacgccaccgtgcccgatggagagtgctgcccacgttgtggaaccccgagtgactacgct gaggatggttggtccccctggtctgaatggactcattgttctgtgtcttgtggacgggga atccaacagcgaggtcgatcatgcgaccgcatcaacagtaactgcgagggcacctctgtg cagacccgcgactgttaccctcaggaatgtgacaagcgcttcaagcaggatggtggttgg agccactggtctccctggtcctcttgctctgtgacctgtggtgaaggagtcatcacccgc attcgcctttgcaactccccaactccccagatgggaggcagagactgccaaggacagggc agagagaccgaggtctgccagaaatcaccttgtccaattgacggagtctggggaccctgg tctttatgggacacctgctctgtcacctgtggaggtggattccagacgcgccagcgtctt tgtaacaaccccacccccaaatacggaggaaaggaatgtcagggtgacggcaaaacatcc caactgtgtggaaaagaagactgtcctattgatggctgtctgtccaacccctgctttgct ggcgctaagtgtagcagctttgatgatggttcctggaagtgtggcgcatgcccagtgggc tacaccggagacggcatcaactgcaaggacatcgatgagtgcaaggaggtccgtgacgca tgcttcacactcaacggagtccaccgctgtgagaacactgagcctggttacaactgcctt gcctgcccccctcgctactcaggacaacagcccttcgggagaggagtggagcaggccaca gccaagaaacaggtgtgcacaccccgtaacccctgccaagatggcagccatgattgcaac aagaatgccaactgtatctacctgggtcagttcagcgacactatgttccgctgtgagtgc aaacctggttacgctggcaatggtcacatctgtggagatgacactgacctggatggatgg cccaacaaagacctcctgtgtgtggagaacgccacctaccactgcaagaaggacaactgt ccaaaccttcccaactctggacaggaggatcacgacaaagatgagcttggtgatgcttgc gatcacgatgatgacaacgatgggatccctgatgatagggacaattgcccaatggtctac aaccccgctcagtatgatgtggacagagatgacgttggtgatcgatgtgataactgtgtg catgagagcaaccccgaccaagtcgacacagacaacaacggagagggtgatgcctgtgct attgacattgacggtgatggcattctaaatgagagggacaactgcccatacgtctacaat gtggaccagagagacactgacggggatggagtgggagaccactgtgacaattgccctctt gaaaacaacccagaccagattgactctgactcagaccgtgtgggagacaagtgcgacaac aaccaggacattgatgaggacggtcatcagaacaacttggacaattgtccctatatcccc aacgccaaccaggccgaccacgacaaagacggcaagggtgacgcctgtgaccacgatgat gacaacgatggtatccctgacgacaaggacaactgtaggctggcctttaaccctgaccag ctggactctgatggtgatggtcgtggagatgtttgcaaagatgactttgaccaagacaac attcttgatatctacgatgtgtgccctgagaactttgccatcagtgagacggacttccgc aggttccagatggtaccgctagaccccaagggaacctcccagatcgaccccaactgggtg gtccgtcaccagggcaaagaactggtgcagaccgtcaactgtgaccctggcatcgctgtt gggttcgatgagttcaacgcagtggactttagtggaacgttctttatcaacacagacagg gacgatgactatgctggatttgtgtttgggtaccagtccagctccaggttctatgtggta atgtggaagcagatcacacagacctactggtcccacacgccgaccagagctcagggctac tccggagtgtccatcaaagtggtcaactccaccacaggacctggggagcatctgaggaac gccctctggcacaccggtgacactgctggacaggtgcgtactctgtggcacgaccccaag aacatcggctggaaagactacaccgcctacagatggcacctgatccacaggcccaagtct ggactcatcagagttgtgatgtatgaaggcaagagaatcatggccgattccggaaatatc tacgacaagacttatgctggtggaagactaggcatgtatgtcttctctcaggagatgaca tacttctcagacctcaaatacgaatgcagagattcttaa

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