Salmo trutta (river trout): 115177318
Help
Entry
115177318 CDS
T08542
Name
(RefSeq) nuclear pore membrane glycoprotein 210-like isoform X1
KO
K14314
nuclear pore complex protein Nup210
Organism
stru
Salmo trutta (river trout)
Pathway
stru03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
115177318
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stru03019
]
115177318
Messenger RNA biogenesis [BR:
stru03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
115177318
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_NUP210_13th
Ig_NUP210_2nd
Ig_NUP210_5th
Ig_NUP210_15th
Ig_NUP210_7th
Ig_NUP210_16th
Ig_NUP210_3rd
Ig_NUP210_4th
Ig_NUP210_1st
Ig_NUP210_9th
Ig_NUP210_8th
Ig_NUP210_6th
Ig_NUP210_14th
Big_2
NUP210_Ig
Motif
Other DBs
NCBI-GeneID:
115177318
NCBI-ProteinID:
XP_029593832
LinkDB
All DBs
Position
37:1431834..1479572
Genome browser
AA seq
1889 aa
AA seq
DB search
MAVLNPKVLCTFFIFSVTIIALSQSTRLNVPKLLLPRSNHNHVNFTLTAEKGCYKWVSSR
PQAVVVWPLSPSIPPSILPPSACSQQVLVSARPLSAPLYTNQGASIIRGQDSVTGHTLRC
DVIVDQIKQIQVVTTTRQLFTEDPPLVLSVVALDSGGNTFSSLAGLQFDWRLVKDSETAE
IVRFVRFSEAGYSPPHHILSLEEAGQKGDSVLLEGVRSGVVQVRASLSHPDYKWVEPASV
SLTVTDRLYLSPSHDAYLLLGSTLSFRVWKSVHDTETEVVLGEGEYELSVERDPNDDDDV
ITVDQDTGTITARGLGRTTLSVTHPSLPENSASHLPRCSVFVVEPSYLTLGVEEEDRWVL
ESGRQYQVTVRVHDQEGHTAHLAQNVVMTVDFSDWLFYVLETSSNSSYHVLETQGSGHTT
IRAALFTVLTEDGRALPLIPPIRAEQEVEIYEPLTMQPRLLVFPWQPEGQLYQHHLQVEG
GSGTVSWSVSDSDVAVVTIKGEVMAGKRRGQVDIQASDARNPLHTATGQVYVLRPAGVDV
LTQRGDCRVGETITLPLAVWGVQEEDQAQDPPQGSSGPQTLLQVTDCSLINLHVTTSPQG
VFSPLPGSVGPGSGFCGGLQLEAVGPGHTLITITVEMEHYNITSMATLAAHSPLKALVSE
VVLSLGASCLIVFQGGPQPWPLVPARFHGDAQAEGEGLGVEALSLSEPRRAQQHAYRVTC
HTLGEQWLVFSSGNSPGPLNQDPSVERSRVRVDCSAPGSLSLSLLPSSPPSIPPSSLSHP
CPEPHYPASLLSVSSSRDAVLQLAVFDHRGVQFDNFSSCSVNWLTSNYSLLSLPSHTHMG
LADTHTPSGHSKLHGRQVLRAHDLTGTVTITVALTPAQDSWATPLTASVHLRLVEDVLWD
KRAITLYNHPDSTENLTLVQGSGHFLVRLQDRELANITYLENSNVVQVSPLRPGLSSILA
YDLCLTSADPAVTSISISDITDFQIDFVDIVEVDHSALVRVRVLDSNRQPFLHRNLPLMH
LKLTPSSPILTVDPAGPLDSVSVGYRVSGQTVGVVSLHLSAVDSSGSVRTSSHKQLQVYP
RFTLQPRSLALTLGSVRQVKWEGGPHPQSSVGFSVSDSRIATVTDTGLVRGVAVGVVKLR
GALQTVTQDTGALLTFAQDEVDVEVFNLTGVRIQAPLVKLSVGTEMPVYVMGSDSSQNPF
ALGSVESGLSFHWNLGKLGVLEIQTRHTQAGVTVSPAHSFSVLVRAWAAGRTSLRVTVQL
ANHTSASHQQLSDEIQILVYQEMQLAVGTSRSILMSPYSHYALQSNKDTICPVRYGLCQC
VKGEGLVTVDSQGVLRAGPDTGSALLEVIAMETCGVNQTLLISVRVSPVWFVRLFSVSSL
YSVGGGGLPAFPLGWTIRVRALCYDNLGQQFNAHNSLTHITTNRDDLVQVTPDSDSHSFV
VQTVSGGLTVLGVQADPTNPSLSDYTPLPVLPAISAPTHTLRPGDTLCFNTPLTGPHGQP
GQWNVSSSRVLQIDSKTGAALAKHSGTVVVYYRLEGGQQALREVKVDSPVIPELSPPDDR
FLTNWPGAADYTVPVEIYTSPVNTAQCSLSQREAIEMKLQPEAELRCSLHFSAPYLQLNT
LQAVMVTTPHYDLDSGEYSCRVSVRPQSDSVLHLLSSLSVSVSLSASLRGQSPVPVLPLS
ALSLPLSGHLVQLPYLPAFHCPVSFLVLSALQPMAEFSVLGTKEVLSALQFHSDSTDVLL
SEPSQSDGHLVLSVYISTSWVKSQALPPIANITLSSHLTPQTHVLTVYITVDSEVKIGST
DQIRLQSSWTQLLDFHLILVFAVFAVMATTATLYIVYNSCMQTVPVPVVGLYPNTLECSR
TVRFSPWIRPSSPDTERIIRRRSWLWSTR
NT seq
5670 nt
NT seq
+upstream
nt +downstream
nt
atggccgttttaaaccctaaagtattatgtacattttttatttttagtgtaactattatt
gctttgagccagtcgacaaggttgaatgttcccaagttacttttgcccagatcaaatcat
aatcatgtcaacttcacgttgacagcagagaagggatgctataaatgggtgtcctcccga
ccccaggcagtcgttgtttggcccctctctccttccatccctccctccatcctccctcca
tcagcctgtagccagcaggtcctagtgtccgcccggcctctgtccgctccactgtacact
aaccaaggggccagcatcatacggggtcaggactctgtgactggccataccctgcgctgt
gatgtcattgttgaccagatcaagcagattcaggttgtcacgacgacgcgtcaactgttt
accgaagacccacccctcgtgctctccgtcgtggcactggactcaggaggcaacacattc
agtagtctggcaggtctacagtttgactggaggctagtaaaggactcagagacagcagag
attgttaggtttgtgcgtttctcagaggcgggctactccccgccccatcacatcctgtcc
ctggaggaagcaggtcagaaaggggacagtgtgttgctggagggggtccgtagcggggtg
gtacaggtcagggcctccctctcgcacccagactacaagtgggtagagccagcctctgtg
agcctgaccgtgacagacagactctaccttagcccctcccatgacgcctacctgctgcta
ggctccaccctctccttcagagtctggaaaagcgtgcatgacacagaaacggaggtggtg
ctgggtgagggagagtatgagctgtctgtagagagagacccaaatgacgatgatgatgtc
atcactgtggaccaggacacagggaccatcaccgcccgagggctaggccgcaccacgctg
tccgtcacacaccccagcctaccagaaaactctgcttcccacctgcctcgctgttctgtg
tttgtggtggagccaagttacctgacgctaggtgtggaggaggaggacaggtgggtgttg
gagagtggtcgtcagtaccaggtgactgtacgagttcacgaccaggagggtcacacagca
cacctggcacagaatgtagtgatgaccgtggacttctctgattggctgttctatgtcctg
gagacttcctctaacagttcctaccatgtactggaaacacaagggtctgggcacactact
atacgagctgcactgttcactgtgctcactgaggatggccgagcgttgcccctgatacca
ccaatcagagcagagcaagaagttgagatctacgagcccctcacaatgcagccccgcctc
cttgtgtttccctggcaacctgagggacagctctatcagcaccacttgcaggtagagggt
ggcagtggtactgtgagctggtcggtgagtgacagtgatgttgccgtggtgacaataaaa
ggggaagtcatggcgggaaagagacggggccaagtggatattcaggcatcagacgcacgc
aaccctctacacaccgctactggacaggtgtacgtgttgaggccagctggtgtggatgtc
ctgacccagagaggtgactgtagggtgggagagaccatcacccttcccctggctgtctgg
ggggtccaggaggaggaccaggcccaggaccctccccagggaagctctggcccccagacc
ctgctgcaggtgacagactgctctctcatcaacctccacgtcaccacgtcaccacagggg
gtattcagccctctaccaggttctgtgggtccaggctcagggttctgtggaggactccag
ctggaagcagtgggaccaggccacaccctcatcactatcaccgtggaaatggaacactac
aacatcacttccatggcaacgctggccgcccacagtcccctcaaggccctggtttcagag
gtggtcttgtctttgggtgcgtcttgcctcatcgtcttccagggggggccacagccctgg
cccctggtccctgcacgcttccatggcgatgcccaggctgagggggaggggctaggcgtg
gaggctctcagcctatcagagcccaggagagcccagcagcacgcttacagggtcacctgc
cacaccctgggggaacagtggctggtgttcagcagtgggaactccccaggtcctctgaac
caggatccctcagtagagcggagcagagtgagagtagactgcagtgccccgggttctctc
tctctctccctcctcccctcctctcctccctccatccctccatcctccctgtcccacccg
tgccctgagccccactatcctgccagcctgttgtctgtgtccagtagcagggatgctgtg
ctgcagttagcagtgtttgaccaccggggggtgcagtttgacaacttcagctcgtgctct
gtgaactggctgacctctaactactccctgctgtccctgccctcacacacacacatgggc
ctggcagacacacacacacccagcggccacagcaaactgcacggtcgtcaagtgctccgc
gcccacgatctaacagggacagtcaccatcactgtggccctcacacctgcacaggactca
tgggccacaccgctgactgcgtctgtgcatctgagactggtggaggacgtgctgtgggac
aaacgtgctataaccctctataaccaccctgacagcactgagaacctgacattggttcag
ggttcaggacacttcttggttcgtcttcaggacagagagctggccaacatcacttacctg
gagaacagcaatgttgtacaggtgtctcccctgcggcctggcctctcctccatcctggcc
tatgacctgtgtttgacctctgctgaccccgccgtgacctccatctccatctctgacatc
actgacttccagatagactttgttgacattgtggaggtggaccacagtgctctggttcgt
gtgcgtgttctagactctaacagacaacccttcctacatcgtaaccttcctctgatgcac
ctcaaactgaccccctcctcacccatcctcactgtggatcctgcagggccgttggacagc
gtctctgtaggttaccgtgtgtcaggtcagacagtgggagtggtcagtcttcacctgtct
gcagtggacagtagtgggagtgtccggacctcctctcacaaacagctacaggtctacccc
agattcaccctgcagccacgaagtctggcactgacactgggcagcgtacgacaggtgaag
tgggagggtggcccccacccccagtccagtgtgggcttctctgtgagtgacagccgcatc
gccacggtgaccgacacaggattggtccgtggagtggcagtgggcgtggtcaaactcaga
ggggcattgcagaccgtcactcaggacaccggagctctgctcaccttcgcacaggatgag
gtggatgtggaggtgtttaacctgacaggggtcaggatccaggcccctctggtcaaactg
tctgtgggcactgagatgccagtgtatgtgatgggcagtgacagtagtcagaaccccttt
gctctgggcagtgtagagtctggtctctccttccactggaatctgggcaagcttggagta
ctggagatacaaacacgacacactcaggcgggggtgactgtctctcctgcccatagtttc
tctgtactggtgagggcgtgggcagcgggcaggaccagtttgagagtgacagttcagctg
gccaatcacacgtcagcctcccaccagcagctctctgacgagatacagatactggtgtac
caggagatgcagctggctgtaggaacctccagatccatcctcatgtctccctactcacac
tacgcacttcagagcaacaaagacactatctgtcctgtgcggtacggcctgtgtcagtgt
gtgaaaggggagggtcttgtaacagtggacagccagggagttctgagggcggggcctgac
acgggatctgccctgctggaggtcatcgctatggagacctgtggggtcaaccagaccctg
ctcatcagcgtccgggtgtctccagtgtggtttgtcaggctgtttagtgtgtccagcctg
tacagtgttggagggggaggcctgcctgcctttcccctgggctggaccatcagagtcagg
gctctctgctacgacaacctgggacaacagttcaacgcccataacagcctcacacacatt
accaccaacagggatgacttggtgcaggtgactccagactcagacagtcattccttcgtg
gtccagacagtgtctgggggtttgacagtcctaggggtgcaggcagaccccaccaacccc
tccctgagtgactacacccccctccctgtcctccccgccatctctgcccccacacacaca
ctcaggcctggagacacactctgcttcaacacccccctgacaggaccgcacggccagcca
ggtcagtggaacgtgtcgtctagtcgtgttctgcagatcgactcaaagacgggagctgcc
ctggcaaagcattctgggacggtagtggtctactacagactggaaggtggacagcaggct
ctcagagaggtgaaggtggactctccagtcatcccagaactctctcctcctgatgatcgt
ttcctcaccaactggcctggcgcagctgactacacggttcctgtggagatatacacctcc
cccgtcaacacagcccagtgttccctgtcccagagggaggccatagagatgaagctgcag
ccagaggcagagttacggtgttccctgcacttcagcgccccctacctccagctcaacaca
ctgcaggctgtgatggtcaccacgcctcactatgacctcgactcaggtgaatacagctgc
agagtctctgtccgtccccagtcagactccgtcctccacctcctctcctccctctctgtc
tccgtctctctctcagcctctctgcggggccagtcccccgtccctgtcctccctctctct
gctctgtcgctacctctctccggacatttggtacagttgccgtacctgcctgcgttccac
tgcccggtgtctttcctggtgctctctgctctgcagcccatggcagagttctctgtgctg
ggcaccaaggaggtgctctctgccctacagttccactctgacagtactgacgtgctgcta
tctgaacccagtcaatcagacggacatttggtgttgtctgtctacatttccacttcctgg
gtcaaaagtcaggccctgcccccaattgccaacatcaccctctccagccacctgacccca
cagactcatgtccttacagtttacatcacggtggacagcgaggtgaagataggttccaca
gatcagattcgtttacaatcttcctggactcagctcctggacttccatctcatcctggtc
tttgctgtgtttgcagttatggccactactgccaccttatacatagtgtacaactcctgc
atgcagacggttcctgtcccggttgtcggcctgtacccaaacacactggaatgcagcagg
acggtgcgtttctctccctggatcagaccctcgtccccagacacagaaaggatcatccgc
agacgcagctggctttggagcacacggtga
DBGET
integrated database retrieval system
