Salmo trutta (river trout): 115178268
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Entry
115178268 CDS
T08542
Name
(RefSeq) low-density lipoprotein receptor-like
KO
K12473
low-density lipoprotein receptor
Organism
stru
Salmo trutta (river trout)
Pathway
stru03272
Virion - Hepatitis viruses
stru04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03272 Virion - Hepatitis viruses
115178268
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
115178268
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
stru04131
]
115178268
Membrane trafficking [BR:
stru04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
115178268
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_a
Ldl_recept_b
FXa_inhibition
cEGF
EGF_CA
SGL
EGF_3
EGF
DUF5050
hEGF
DUF1180
Gemini_mov
Motif
Other DBs
NCBI-GeneID:
115178268
NCBI-ProteinID:
XP_029595231
Ensembl:
ENSSTUG00000040557
UniProt:
A0A674DS27
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All DBs
Position
38:5365580..5386609
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AA seq
874 aa
AA seq
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MLPTRVGITGLTACCLVLLSHFFAPTDAAYTCGTSQFRCGNGKCITSRWVCDGADDCGDG
TDELPAACEAKTCLPTEFSCGGPLNKCISGTWHCDGQADCDNGADEKSCAGKNCTDDEFQ
CSNGQCIAVSFVCDKDKDCSDGSDETSCPTVTCGPNAFQCNNTVCVPRFWACDGDADCAD
GSDEWPQNCGGRDTKPTTKPCGPHEFHCGSGECIHRGWSCDGGKDCQDNSDETNCSRPTC
QPDEFQCNDGSCIHGSRQCDRQFDCKDLSDEMDCKSVDACEGPNNFRCKSGECITVDKVC
NGQKDCRDMSDEPIRECGNNECLTNNGGCSHTCTDLKIGFNCSCPAGYSLWKDNRKCEDI
DECADPDTCTQICVNILGSYKCECEEGYELDPKTKTCKAATGTVPYLLFTNRHEVRKMTV
DRREYVPLIPSLKNVVALDMDMPGHKIFWSDLHHRKIYSADMNLAGNSSHHNVVIDSQME
APECLAVDWIHGNIYWTDSVLHTISVATTDGTRRKTLISEGLDKPRSIVVDPANNFMYWT
DWGNEAKIEKSGLNGANRVALVTDNIMWPNGITLDMVNQRLYWVDSKMHTLSSIGINGEG
RHTLIYNEDKLAHPVSLAVFQEKVFWTDMGDRAVKSANRLTGNDITVLAEDLVQPEDIIV
YHNLKQPIGKNWCTEKNFVNGGCEFLCLPAPQINQHSPKYTCACPDHMTLSLDMRKCVAA
PTTTAPPTTPKTAAPIPTGAPTKQPARPTSTTTTTTSSARRAQPQDPDTSSTAHSPQETA
VTGQSGYVAMPKVAEASHHTVLYIVLPIMMMCLVLFGAVLLWRHWRLKNTNTIHFDNPVY
QKTTEDELHICRNHSQDGYTYPQRQMVSLEEDLA
NT seq
2625 nt
NT seq
+upstream
nt +downstream
nt
atgctaccgactcgtgtgggaatcaccgggctgactgcatgttgcctggttttgctttcc
cacttttttgctcctacagatgctgcgtatacatgtgggacaagtcagttcaggtgtggc
aacgggaaatgtatcaccagccggtgggtgtgtgacggagctgatgactgtggtgatgga
actgatgagctgccagccgcctgtgaggctaagacctgcctgcccactgagttcagctgt
ggaggcccactgaacaagtgtatctccggaacgtggcactgtgatggccaagctgactgt
gacaatggagctgatgagaagagctgtgccggaaagaactgcaccgacgatgagttccag
tgctccaacggtcagtgcatcgccgtctccttcgtgtgcgacaaggacaaggactgttcc
gatggttctgacgagacttcctgtcccaccgtcacctgcggtcccaacgccttccagtgt
aacaacactgtgtgtgtgccgcgtttctgggcctgcgacggcgacgccgattgtgccgac
ggttcagacgagtggccccagaactgtggcgggagggacaccaaaccgacaacaaagccc
tgtgggccacatgaattccactgtgggagtggggagtgtatccataggggttggagctgt
gatggaggcaaggactgtcaggataattcagatgaaaccaactgcagtcggcccacttgc
cagccagatgagtttcagtgtaacgatggctcctgtatccatggtagccgtcagtgtgac
cgccagtttgactgcaaggatctgagcgatgagatggactgcaagagcgtggatgcgtgt
gagggcccgaataacttcaggtgtaagagtggggagtgcatcaccgtggacaaggtgtgc
aacgggcagaaagactgccgagacatgtccgacgaacctatcagggagtgtggcaacaac
gagtgtttgaccaataacggcggttgctctcacacctgtaccgacctgaagattggcttc
aattgctcctgtcctgctgggtacagtctgtggaaggacaacaggaaatgtgaagacatt
gatgagtgtgctgacccagacacctgtacccagatctgtgtgaacatcctgggaagttac
aagtgtgagtgtgaggagggctacgaactggaccccaagaccaagacctgcaaggctgcc
acaggtactgtcccctacctgttgttcaccaaccgccacgaggtgaggaagatgactgtg
gaccgtagagagtacgtccctctcatccccagcctgaagaacgtggtggccctggacatg
gacatgcctggacacaagatcttctggtctgacctgcaccacaggaagatctacagcgcc
gacatgaatttggcagggaactcctcccaccacaacgtggtgattgacagccagatggag
gcgccggagtgtctggccgtcgactggattcacggtaacatctattggacggacagcgtg
ctccacaccatctctgtggcaaccacggacggaacacggcgaaagacgctgatcagcgaa
ggactggacaaaccaagaagcatcgtggtggacccagccaacaacttcatgtactggact
gactggggcaacgaggccaagatcgagaagagtgggctgaacggtgccaaccgcgtcgcc
ttggttacggacaacatcatgtggcccaacggcatcactcttgacatggttaaccagcgt
ctgtactgggtggactctaagatgcacaccctctccagcatcggcataaacggagaagga
cgacacacactcatctacaacgaggacaagcttgctcaccccgtctctctcgccgtcttc
caggagaaagtattctggaccgacatgggcgacagagcagtcaagagcgccaaccgcctg
acaggaaatgacatcactgtactggcggaggacctggtgcagccagaggatatcattgta
taccacaacctcaagcagcccatcggaaagaactggtgtacagagaaaaactttgtgaat
ggaggttgtgagttcctatgtctgcctgctccccagatcaaccaacactcccccaaatac
acctgtgcctgtcctgatcacatgaccctcagcctggacatgaggaagtgtgtggcagct
ccaacaactaccgctccccccaccactcccaaaactgcagcccccatccctactggggcc
ccaaccaaacagccagctcgtcccacttccaccacaactacaactacctcctccgcccgc
cgggcccagcctcaggaccctgatacgtcctcgaccgctcacagtccacaggaaactgcg
gtcacaggtcaaagtggctatgttgccatgcccaaagtagctgaggcatcacaccatact
gtgctctacattgtcttacctatcatgatgatgtgcctggtgctgtttggtgcagtgttg
ctatggagacactggaggctgaagaacaccaacaccatccactttgacaaccccgtgtac
cagaagaccacagaggacgagttgcacatctgtagaaaccacagccaggacggatacacc
tacccacagagacagatggtgagcctggaagaagacctggcatga
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