Salmo trutta (river trout): 115179285
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Entry
115179285 CDS
T08542
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
stru
Salmo trutta (river trout)
Pathway
stru03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
115179285 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
stru03400
]
115179285 (lig4)
Enzymes [BR:
stru01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
115179285 (lig4)
DNA repair and recombination proteins [BR:
stru03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
115179285 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
DNA_ligase_A_C
BRCT
BRCT_2
RNA_ligase
C8-3_MUC4
Motif
Other DBs
NCBI-GeneID:
115179285
NCBI-ProteinID:
XP_029596526
Ensembl:
ENSSTUG00000048970
UniProt:
A0A674EQ10
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All DBs
Position
39:complement(24411090..24415494)
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AA seq
914 aa
AA seq
DB search
MEGTSKSKSAAPQSSVAAQVPFLHLCTTLEKIQKTKLRPDKSKFLHDFIDSWRKFHAALH
KDNPTTTDSFYPAMRLIVPSFERERMAYGIKESMLAKLYIDVLGLPKNGPEANKLLNYRT
PTTSQGEAGDFALMTYFVLKKRCTSQGNLTIREVNDFLDSVAINNAGKQKDLVKKSLLHL
ITQSTALEQKWLIRMILKDMKLGVSKETVLQVFHLDAAELYNVTTDLNKVCRQLHDPSVS
LSEVSIGLFFAFKPMLAAVANMRQVEKQMGNSNFFIETKLDGERIQLHKDGDVYKYFTRN
SFEYTQQFGASPLEGSLTPFIHNVFKPHVFNCILDGEMMAYNPTADTFMQKGSKFDIKRL
VDDSELQTCFCVFDVLLVNDRKFGNETLKVRHDNLQTVFTPVKGRIHVVPKTEAKTMQEV
VNALNEAIDNREEGIMVKDPSSVYKPDKRGEGWLKIKPEYVDGLMDELDLLIVGGYWGKG
RRGGMMSHFLVAVAEAPKPGEKPSVFHTLCRIGSGYTMKELYDLGLKLAKHWKVYRKNDP
PASILCGTERPEVYIDPCNSVIIQVKAAEIVSSDMYKTNCTLRFPRIEKIREDKEWHQCM
TLAELDQFRNKASGKLFSRHLRINDNDEPEKKKSKSLAAAKPKKAVGVIDHFKSQDLSGV
TKETDMFEDVEFCVMNGNEAHPKAELEKAVARCGGIVVQNPGPDTYCVIAAVENMRVKNL
ISSDQHDLVWAAWLLECLDRKQVVPWQPCHMIHMSPSTKEQFAKEYDCYGDSYFVDTDEQ
QLREVFGRIGRAVTLTAQCIAKLEERYSWDDLPTSMFRPFRVYMDRYTDIGDPKSIVPAT
CLDTRALEFRFHGGTVVQKLEEGVSHVIVVEETRVLALRTLRRLFTKKFKIVRESWVTES
IKAGFLRNDNDYLV
NT seq
2745 nt
NT seq
+upstream
nt +downstream
nt
atggagggaacctcaaaaagcaaatctgctgctccccagagctctgtcgctgctcaagtt
ccatttcttcacctgtgcaccacgcttgaaaaaatacagaagaccaaactccgaccagac
aaatcaaagtttctccatgacttcatagactcctggaggaagttccatgcggccctccac
aaagacaaccctaccaccacagactctttctacccagccatgcgtctcatagtcccctcg
ttcgaaagggagcgcatggcctatggcattaaagagagtatgttagccaagctctacata
gacgtcttgggtctccccaagaacggaccggaagccaacaaactgttgaattaccgcacc
cccaccacatctcagggggaggcgggtgacttcgctcttatgacctactttgtgttgaag
aaacgctgcacaagccagggcaacctcaccatcagagaagtcaacgactttctggactcg
gtggccatcaacaatgctggtaagcagaaggacctggtgaagaagagcctgctgcacctt
atcacccagagcacggcactggagcagaagtggcttatccgcatgatcctgaaggacatg
aagctgggggtcagcaaagagaccgtgctccaggtgttccacttagatgcggccgagctc
tacaacgtcaccacagacctaaacaaggtgtgccggcagctccacgacccctctgtgtcc
ctcagcgaagtgtccattggcctgttctttgccttcaaacctatgctggccgccgtggcc
aacatgcgccaggtggagaagcagatgggaaacagcaacttcttcatagagaccaagctg
gatggagagcgcatccagctgcacaaagatggcgacgtctacaagtacttcacacggaac
tccttcgagtacacccagcagtttggtgcatcgccgctagagggctccctgacgcctttc
atccacaatgtcttcaagccccacgtattcaattgcatcctggatggggagatgatggcg
tacaaccccactgccgacaccttcatgcaaaaaggaagcaagtttgacatcaagaggcta
gtggatgactccgagctgcagacgtgcttttgcgtttttgatgtacttcttgtgaacgac
cgcaagtttggcaacgagacgttgaaggtgcgccacgacaaccttcagactgtcttcact
cctgttaaagggaggatacacgtggtgccgaaaacggaggccaaaactatgcaagaggtg
gtgaacgccctcaatgaagccattgacaacagggaagagggcatcatggtgaaagatccc
tcatccgtatacaagcccgataaacgaggtgagggctggctcaagataaagccggagtac
gttgatggcttgatggatgagctcgacctgttgattgtcggaggctactggggaaaagga
aggcgaggtggcatgatgtctcattttctcgttgcggttgccgaagctccgaagcctgga
gagaaaccctccgtcttccacacgctctgtcgaatcggttccggctacaccatgaaggag
ctgtatgacttggggctgaagctggccaagcactggaaagtctaccggaagaacgaccct
ccggcctctattctgtgtgggacggagagaccagaagtctacattgacccatgcaactcg
gtcatcatccaggtgaaggcagcagaaatagtcagtagtgacatgtacaaaaccaactgc
actctacgcttccccagaatcgagaagatccgggaggataaagagtggcaccagtgcatg
accctagctgagctcgatcagtttcgcaacaaggcgtccgggaagttgttctcgcgccac
ctccgcatcaatgacaatgacgagcctgaaaagaagaagagcaagtcgctggcagcggcc
aagcccaagaaagctgtcggcgtcatcgaccacttcaagtcccaggacctatctggcgtc
accaaggagacggacatgttcgaggacgtggagttctgtgttatgaatggcaacgaggcg
caccccaaggcggagctggagaaagcagtggcccgatgtggcggtattgtagtccagaac
ccgggaccggacacctactgtgtgatcgccgctgtggagaacatgcgtgtgaagaacctg
atctcttcagaccagcacgacttggtgtgggctgcctggctgctggagtgcctagacagg
aagcaggtggtgccatggcaaccgtgtcacatgatacacatgtcgccctccaccaaggag
cagtttgccaaggaatacgactgctacggagacagctacttcgtggacacggacgagcag
cagctgagggaagtcttcggtcggattggcagagcggtcactttgacggcacagtgcatc
gctaagttggaggaacgctacagctgggacgacctccccactagcatgttcagacctttc
agggtctatatggacagatacacagacataggagaccctaaaagcatcgtaccagcaact
tgtctggacacgcgggctctggaattccgcttccacggagggacagtagtgcagaagctc
gaggaaggggtctctcatgtcatagtggtggaggaaacaagagtgttggctttaagaacc
ctcagacgactctttaccaaaaagtttaagattgttagagagtcatgggtaacagagtct
atcaaagcagggtttttgcggaatgacaatgactacctagtgtga
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