Salmo trutta (river trout): 115194763
Help
Entry
115194763 CDS
T08542
Symbol
ddx58
Name
(RefSeq) probable ATP-dependent RNA helicase DDX58
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
stru
Salmo trutta (river trout)
Pathway
stru04622
RIG-I-like receptor signaling pathway
stru04623
Cytosolic DNA-sensing pathway
stru05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
115194763 (ddx58)
04623 Cytosolic DNA-sensing pathway
115194763 (ddx58)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
115194763 (ddx58)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
stru04054
]
115194763 (ddx58)
Enzymes [BR:
stru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115194763 (ddx58)
Pattern recognition receptors [BR:
stru04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
115194763 (ddx58)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIG-I_C
CARD_2
RIG-I_C-RD
DEAD
ResIII
Helicase_C
AAA_19
PhoH
IstB_IS21
SNF2-rel_dom
AAA_22
AAA_25
Motif
Other DBs
NCBI-GeneID:
115194763
NCBI-ProteinID:
XP_029610546
Ensembl:
ENSSTUG00000001907
LinkDB
All DBs
Position
5:complement(63089977..63121494)
Genome browser
AA seq
973 aa
AA seq
DB search
MYESEKLNLKRCSEYLIYILRPSYVKGFMTTYLQPEVAERILSEESKSVTSAAQVFLDQV
CLLEELGWYQALLDALDAEDYKGLCEALKKWDFQILESTKIHRVLLERIEPSFTKMIKPR
DLLRHLGDCLRKRECEEIQAIENQKGPIAAAERLTDCLKRSDKQNWFKLLKSALFSCELT
EALQLLEPDTESSVSEMETGDEEEGATMTTISFQYTEQSDDDDGMLMSGNQLTPSETPPT
SATGANSGVGEVQKGGEKRLREEEERGGGEKSRGGEKKMREYQRELAEPVFQGKNTVICA
PTGCGKTVVALAICEHHLKVKGKGAKVVFMATKVDVFNQQYKLFQDHFQEKDPDIRIDGL
CGNQGDQLSMKVVMENNDIIVLTPQILVNAMAGGEIPSLSCFSLLILDECHNTTGKHPYN
IIMTSYLDAKLSKEQNGQHLPQIVGLTASVGIGSFKNQSEAENNICQLCASLDSRIISTI
HTNTDELQSYVHTPDKEFFLVEKRHTDPFIRIIHDIMAKIEGLAKTVYNIESLSAIENRD
YGSQKYEQWIVDVQKKCRVLQLKDQEEESRVCRALYNYTEHLRKYNDALIINEDARTKDA
LDYLSVFIQQVKNAGHDETEQRLTAYFDGQQGVLRGLSSGGQKENPKLDMLQYILEEQYR
QNDETKSVLFVRTRALADALKSWIEESDSLKFLKPGVLIGRGHKSSQLTGTRMTLNSKKG
VLDSFKSFDNQSKILIATSVADEGIDIPQCNLVLMYEYVGNVVKMVQVRGRGRAQGSKCI
LVSDKKDRIDKEKHNMEKEKIVEKAIRKLQDTPTEMLHKMEVFQRGDKVCRDMVKMVPER
RLTEGSYQLLCSKCKKHSCYTDDIRVLQDSHHIVLDPTLFSRARTEPHPKPKGFMGLVKT
KKLFCHCGLDWGIVASYLTIQNLPVLKIESFVVKNCVTEQQRYYRKWRDVTFSMKTFELT
DIADSWNPLLEDQ
NT seq
2922 nt
NT seq
+upstream
nt +downstream
nt
atgtatgagtctgagaagctcaatctaaagaggtgtagtgaatacctgatttatattttg
cgaccgtcttacgtcaaaggcttcatgacaacttacctgcaaccagaggttgcagagagg
atcctatcagaggagagtaagtctgtgacgtcagcagcccaggtgtttctagaccaggtg
tgtctcctggaagaactgggatggtaccaggccctgctagacgccctggacgcagaagac
tataagggtctgtgtgaggccctgaagaagtgggactttcagatcctggagagcaccaag
atacacagagtgcttctggaaaggatagaacccagcttcaccaaaatgatcaaacccaga
gacctgctgcgccacctgggagattgtctcagaaagagagagtgtgaagagatacaggca
atagagaaccagaaggggcctatagcagcagcagagaggctgactgactgtctgaagaga
agtgataaacaaaactggttcaaactgctgaagtcggctctgttctcctgtgaactgact
gaggccctgcagctactggaacctgacacagagtcatcggtgtcagagatggaaacaggt
gatgaggaggagggtgcaaccatgacgactatctccttccagtacaccgagcagtctgac
gacgatgatgggatgctgatgagtggcaatcaattgacaccctctgaaaccccgcccacc
tctgcaacaggagccaatagtggtgttggtgaagtccagaaaggaggagagaagaggctg
agagaggaggaggagagaggaggaggagagaagagtagaggaggagagaagaaaatgaga
gagtatcagagagagctggctgaaccggtgtttcagggcaagaacacagtcatctgtgca
ccaaccggctgtgggaagacggtggttgccctggcgatctgtgagcaccacctgaaggtc
aagggtaagggggcaaaggtcgtcttcatggctaccaaggtggacgtcttcaaccagcag
tataaactgttccaggatcatttccaagagaaagaccctgatatcaggatcgacggcctt
tgcggtaaccagggcgaccagctgtcgatgaaggtggtcatggagaacaatgacatcatc
gtcttaacccctcagatcctggtgaatgccatggccggaggggagattccctctctctcc
tgcttctctctgttgattctagatgaatgtcacaacacaacaggtaaacacccctataac
atcatcatgacgtcgtacctggatgccaagctcagcaaggagcagaacggacaacacctg
ccccagattgtgggtctgacggcctcagtggggattggctcgttcaagaaccaatcagag
gctgagaacaacatctgtcagctgtgtgccagtctggacagccgcatcatctccaccata
cacacaaacactgatgagctacagtcctacgtacacacacctgacaaagagttcttcctg
gtcgagaagagacacacagatcctttcatcaggatcattcatgacatcatggctaagata
gaaggactggccaagaccgtctacaatatagagtccttgtcagccatagagaatcgtgac
tacggcagtcagaagtatgaacagtggatcgttgatgttcagaagaaatgcagagttctc
cagctgaaagaccaggaggaggagagtagagtctgtagggccctgtacaactatactgag
cacctgaggaagtataatgatgcgttgatcatcaacgaggatgcccggactaaggacgcg
ttagactacctgtcagttttcatacagcaggtgaagaacgcaggacatgacgagacggag
caacgcctcaccgcttacttcgatggtcagcagggtgtactgcggggtttgtccagcggg
gggcagaaggagaatcctaaattggatatgttacagtacatcctagaggaacagtatcga
cagaatgatgagaccaagtctgtcctgttcgttaggacacgggcccttgcagacgccttg
aagagctggatagaggagtctgactctctgaagttcctgaaaccaggagtactgatcggg
agaggacacaagtccagccagctgaccggcacacgcatgacgctgaactctaagaaaggt
gtgctggattcctttaagagttttgacaatcaaagcaagatcctgatcgctacttcggtg
gccgacgagggcatcgatatcccacaatgcaacctggtattgatgtacgaatacgttggc
aatgtggtcaagatggtccaagtcagaggtcgcggcagggcccagggcagcaagtgtatc
ttggtgtctgataaaaaggaccggattgataaagagaaacataacatggagaaggagaag
attgtagagaaagccatcagaaagctacaggacacacctactgagatgctccacaagatg
gaggtgttccagcgtggggacaaggtgtgtcgtgacatggtgaagatggtgccagagaga
cgcctgactgaagggagctaccagctcctctgctccaagtgtaaaaaacacagctgttac
acagacgacatcagagtactgcaggattctcaccacatcgtgttggaccccactctgttc
tctcgagctcggacagaacctcatcctaaacccaaaggtttcatggggctggtgaagacc
aagaagctattctgtcactgtggactggactgggggatagtggcctcatacctgaccata
cagaacctgcctgtgttaaagatagagagctttgtggtgaagaactgtgttaccgagcaa
cagaggtactacaggaagtggagagacgtgaccttttccatgaagacctttgaacttaca
gacatagctgatagctggaatccactgcttgaagaccagtag
DBGET
integrated database retrieval system
