Salmo trutta (river trout): 115203637
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Entry
115203637 CDS
T08542
Name
(RefSeq) TNF receptor-associated factor 6-like
KO
K03175
TNF receptor-associated factor 6 [EC:
2.3.2.27
]
Organism
stru
Salmo trutta (river trout)
Pathway
stru04010
MAPK signaling pathway
stru04120
Ubiquitin mediated proteolysis
stru04140
Autophagy - animal
stru04144
Endocytosis
stru04620
Toll-like receptor signaling pathway
stru04621
NOD-like receptor signaling pathway
stru04622
RIG-I-like receptor signaling pathway
stru05132
Salmonella infection
stru05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
115203637
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
115203637
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
115203637
04140 Autophagy - animal
115203637
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
115203637
04621 NOD-like receptor signaling pathway
115203637
04622 RIG-I-like receptor signaling pathway
115203637
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
115203637
09171 Infectious disease: bacterial
05132 Salmonella infection
115203637
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
stru04131
]
115203637
04121 Ubiquitin system [BR:
stru04121
]
115203637
Enzymes [BR:
stru01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
115203637
Membrane trafficking [BR:
stru04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
115203637
Ubiquitin system [BR:
stru04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
115203637
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
zf-TRAF
zf-C3HC4
zf-C3HC4_2
zf-RING_2
zf-RING_UBOX
zf-C3HC4_3
Sina_ZnF
zf-C3HC4_4
zf-TRAF_2
zf-RING_5
U-box
TRAF3_RING
DM
RING_XB3-XBAT31
zf-RING_11
Phage_GP20
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
115203637
NCBI-ProteinID:
XP_029624382
Ensembl:
ENSSTUG00000009787
UniProt:
A0A673XDG9
LinkDB
All DBs
Position
12:complement(45497797..45504977)
Genome browser
AA seq
551 aa
AA seq
DB search
MSCFESDKSSLENDEGCCGGAAASQLSNCALAMLEKEGNDSVLSPTESTPTSLQGGAPLQ
GYDVEFDPPLESKYECPICLMALRAAVQTPCGHRFCRSCIEKSIRDTGQRCPVDNEVLRE
DQLFPDNFAKREILSLTVRCTNVGCTDKMELRRLDGHVTKCEFATVPCPLCQDAVWKSQL
EMHQSQHCQRRPVSCPDCVESFVYEDSKIHESLCPFANVVCQYCGMELIRDQLESHYDTD
CPKAPIACTFSTFGCREMMQRNDLAQHMQEFTQMHMRCMAEYLHRHSLTGYTQPPPSEDR
GAAAAEQGAQAGASSGGAPCQCCGELQTIRETTQQLEGRLVRQDHQLRELSIQAGLVAEL
RRKVTSLEENLKELEAKQCQGVYVWPLEGFSGYLRTQAAGQPVVVHSPGFYTGRPGYKLC
LRLHLQTPSAQRCSNYISLFVHTMQGEFDGQLSWPFQGTIRLAVLDQGPEGQHHVEVMET
KPDLQAFQRPTIQRNPKGFGYVTFLHLMELQQRGFVHDDTLLVRCEVTPRFDTALRREGA
AMQPRGPEASL
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atgtcctgctttgagagtgataagagcagcctggagaatgatgaagggtgttgtggtggg
gcggccgcgtcacagctgtccaactgtgcgctggccatgctggagaaagagggcaacgac
tctgtgctgagccccacggagagtacccccaccagcctacagggcggcgccccactgcaa
ggctacgacgtggagttcgaccctccgctggagagcaagtatgagtgccccatctgcctc
atggccctgagggcagccgtgcagacgccgtgcggccatcgcttctgccgcagctgcatc
gagaagtccatccgtgatacagggcagaggtgtccagtggataacgaggtactacgggaa
gaccagctgttcccagataactttgccaagcgggagatcctctccctaacggtccgctgc
accaacgtaggctgcactgacaaaatggagcttcgccgtctggatggccatgttaccaaa
tgtgagtttgccactgtgccatgcccgctgtgccaggacgcggtgtggaagagccagctg
gagatgcaccaaagccaacactgccagcggagacctgtgtcctgtcccgactgtgtagag
agctttgtttacgaggacagcaagattcatgagtcgctgtgtccctttgccaacgtggtg
tgtcagtactgcggtatggagctcatcagagaccagttggaatctcactatgacacagac
tgtccgaaggctccgatcgcctgtaccttcagcacttttggatgtcgagagatgatgcag
cgcaatgacctggcgcagcacatgcaggagttcactcagatgcacatgcgctgcatggct
gagtacctgcacaggcacagccttaccgggtacacccagccaccaccttctgaggaccga
ggggctgccgctgcagagcagggggcacaagcaggcgctagcagcggtggcgccccctgc
cagtgctgcggggaactgcagaccatacgggagaccacccagcagctggagggccgtcta
gtgcggcaggaccaccagctacgtgagctgagcattcaggcgggcctggtggcagagctc
cgtcgtaaggtcacttcgctggaggagaacctaaaggagctggaggccaagcagtgccag
ggcgtgtacgtgtggcccttggagggcttctcgggctacctgcgtacccaggctgccgga
cagcccgttgtggtgcacagcccaggcttctacacgggacggccgggctacaagctgtgt
ctgcgcctccacctccaaacgccctcggcccagcgctgctccaactacatctcactgttt
gttcacaccatgcagggtgaatttgatgggcagctatcgtggcccttccaaggcaccatc
cggctggccgtgctggaccaagggcctgagggccagcaccatgtggaggtgatggagacc
aagcctgacctgcaggccttccagaggcccaccatccagaggaaccccaagggctttggc
tacgtcacctttctgcacctgatggagctgcagcagcgggggtttgtgcacgacgacacg
ctgctggtgcgctgcgaggtgacgccgcgcttcgacaccgccctaaggcgcgagggggcg
gccatgcagcccagagggcccgaggcctcgttgtga
DBGET
integrated database retrieval system
