Streptomyces sp. VN1: EZV63_25675
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Entry
EZV63_25675 CDS
T10674
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
strv Streptomyces sp. VN1
Pathway
strv03030
DNA replication
strv03410
Base excision repair
strv03420
Nucleotide excision repair
strv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
strv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EZV63_25675 (ligA)
03410 Base excision repair
EZV63_25675 (ligA)
03420 Nucleotide excision repair
EZV63_25675 (ligA)
03430 Mismatch repair
EZV63_25675 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
strv03032
]
EZV63_25675 (ligA)
03400 DNA repair and recombination proteins [BR:
strv03400
]
EZV63_25675 (ligA)
Enzymes [BR:
strv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EZV63_25675 (ligA)
DNA replication proteins [BR:
strv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EZV63_25675 (ligA)
DNA repair and recombination proteins [BR:
strv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EZV63_25675 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EZV63_25675 (ligA)
MMR (mismatch excision repair)
DNA ligase
EZV63_25675 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EZV63_25675 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH_5
HHH
Motif
Other DBs
NCBI-ProteinID:
QIP72806
LinkDB
All DBs
Position
5647874..5650069
Genome browser
AA seq
731 aa
AA seq
DB search
MAGDKQAETTSVPAEAREKHVQLAEQIEEHRFRYYVKDAPVVSDAEFDRLLRTLQELEER
HPELRTPQSPTQKVAGSYATEFTAVEHPTRMLSLDNTFNDEEMAAWTERIAKELGEQEYH
FLCELKVDGLAVNLTYERGRLVRAATRGDGRTGEDITPNVRTIAEIPERLAGDQVPDLVE
IRGEVYFPMDKFQELNARLNEAGDKPFANPRNAAAGSLRQKDPRVTATRPLHMVVHGIGV
LEGYSGMTRLSQAYGLLKEWGLPTSPHNRVVDGLDGVREFIGYYGENRHSVAHEIDGVVV
KLDEIRLQGRLGSTARAPRWAIAYKYAPEEVNTRLVDIKVGVGRTGRVTPYAQVEPVTVA
GSEVEFATLHNQEVVKAKGVLIGDTVVLRKAGDVIPEILGPVADLRDGSEREFVMPAECP
ECGTPLKAMKEGDIDLRCPNARACPAQLRERVAYLAGRQCLDIEHFGGVVAAALTGPLEP
SEPPLVDEGDLFDLTVEKLLPITAYVLDPDSGLPKRDPKTGEEKIVTVFANKEGEPKKNT
LALLQHIEEAKTRPLARFINGLSIRYVGPVAAQALAREFRSIDRIEQATEEELASTDGVG
GTIATAVKEWFAVDWHREIVRKWKAAGVPLEDSSGGEDEGPRPLEGLTVVVTGTLENFTR
DGAKDALQSRGAKVTGSVSKKTSFVVVGDNPGSKYDKAMQLKVPVLNEDGFGVLLEQGAE
AATGVALSAEE
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
gtggccggcgacaagcaagcggagaccacgagcgtgcccgccgaggcgcgcgagaagcac
gtgcagctcgctgagcagatcgaggagcaccgcttccggtactacgtgaaggacgccccc
gtcgtcagcgacgcggagttcgaccggctgctgcgcacccttcaggagctggaggagcgg
cacccggagctgcgcaccccgcagtccccgacccagaaggtcgccggttcctacgcgacc
gagttcacggccgtcgagcaccccacgcggatgctgtccctcgacaacaccttcaacgac
gaggagatggccgcctggaccgagcgcatcgcgaaggagctgggcgagcaggagtaccac
ttcctgtgcgagctgaaggtcgacggcctcgccgtcaacctcacctacgagcgcggccgg
ctcgtccgcgcggccacccgcggcgacggccgcaccggtgaggacatcacgcccaacgtc
cgcaccatcgccgagatccccgagcggctggcgggggaccaggtccccgacctcgtggag
atccgcggcgaggtctacttcccgatggacaagttccaggaactcaacgcccggttgaac
gaggcgggggacaagcccttcgccaacccgcgcaacgcggcggccggttcgctccgccag
aaggacccgcgggtcaccgccacccgcccgctgcacatggtcgtccacggcatcggcgtc
ctggagggctactcgggcatgacccgcctctcccaggcgtacggcctgctgaaggagtgg
ggcctgcccacctccccgcacaaccgcgtggtcgacggcctggacggcgtacgggagttc
atcgggtactacggcgagaaccggcactccgtcgcgcacgagatcgacggggtcgtcgtc
aagctcgacgagatccgcctccagggccggctcggctccaccgcccgcgcaccccgctgg
gccatcgcgtacaagtacgcgccggaggaggtcaacacccggctcgtcgacatcaaggtc
ggtgtcggccgcaccggccgcgtcacgccgtacgcgcaggtcgagccggtcaccgtggcc
ggcagcgaggtcgagttcgccacgctgcacaaccaggaggtcgtcaaggccaagggcgtg
ctcatcggcgacaccgtggtgctgcgcaaggccggtgacgtgatcccggagatcctcgga
ccggtcgccgacctgcgggacggcagcgagcgggagttcgtgatgccggccgagtgcccc
gagtgcgggacgccgctgaaggccatgaaggagggcgacatcgacctccgctgccccaac
gcgcgcgcctgcccggcccagttgcgcgagcgggtcgcctacctcgccggccgccagtgc
ctggacatcgagcacttcggcggagtcgtcgcggccgcgctgaccggcccgctggagccg
tccgagccgcccctggtggacgagggcgacctcttcgacctcaccgtcgagaagctgctg
cccatcacggcgtacgtcctcgacccggacagcggtctgcccaagcgcgaccccaagacc
ggcgaggagaagatcgtcacggtcttcgccaacaaggagggcgagcccaagaagaacacc
ctcgcgctgctgcaacacatcgaggaggccaagacccgcccgctggcccgcttcatcaac
ggcctctccatccggtacgtcggaccggtcgccgcccaggccctcgcccgcgagttccgc
tccatcgaccgcatcgagcaggccaccgaggaggagttggcgagcacggacggcgtgggc
ggcaccatcgccaccgccgtcaaggagtggttcgccgtggactggcaccgcgagatcgtc
cgcaagtggaaggcggccggggtccccctggaggacagctcggggggcgaggacgagggg
ccgcgcccactcgaagggctcaccgtcgtcgtcaccggcaccctggagaacttcacccgg
gacggcgccaaggacgccctgcagagcagaggcgccaaagtgaccggatcggtgtcgaag
aagacctcgttcgtcgtggtcggggacaaccccggttcgaagtacgacaaggcgatgcag
ctgaaggttccggttctgaacgaggacggtttcggcgtcctgctcgaacagggagccgaa
gcggccaccggtgtcgcgctttcggctgaggaatag
DBGET
integrated database retrieval system