KEGG   Streptomyces sp. VN1: EZV63_25675
Entry
EZV63_25675       CDS       T10674                                 
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
strv  Streptomyces sp. VN1
Pathway
strv03030  DNA replication
strv03410  Base excision repair
strv03420  Nucleotide excision repair
strv03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:strv00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    EZV63_25675 (ligA)
   03410 Base excision repair
    EZV63_25675 (ligA)
   03420 Nucleotide excision repair
    EZV63_25675 (ligA)
   03430 Mismatch repair
    EZV63_25675 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:strv03032]
    EZV63_25675 (ligA)
   03400 DNA repair and recombination proteins [BR:strv03400]
    EZV63_25675 (ligA)
Enzymes [BR:strv01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     EZV63_25675 (ligA)
DNA replication proteins [BR:strv03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     EZV63_25675 (ligA)
DNA repair and recombination proteins [BR:strv03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     EZV63_25675 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     EZV63_25675 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     EZV63_25675 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      EZV63_25675 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD PTCB-BRCT Nlig-Ia HHH_5 HHH
Other DBs
NCBI-ProteinID: QIP72806
LinkDB
Position
5647874..5650069
AA seq 731 aa
MAGDKQAETTSVPAEAREKHVQLAEQIEEHRFRYYVKDAPVVSDAEFDRLLRTLQELEER
HPELRTPQSPTQKVAGSYATEFTAVEHPTRMLSLDNTFNDEEMAAWTERIAKELGEQEYH
FLCELKVDGLAVNLTYERGRLVRAATRGDGRTGEDITPNVRTIAEIPERLAGDQVPDLVE
IRGEVYFPMDKFQELNARLNEAGDKPFANPRNAAAGSLRQKDPRVTATRPLHMVVHGIGV
LEGYSGMTRLSQAYGLLKEWGLPTSPHNRVVDGLDGVREFIGYYGENRHSVAHEIDGVVV
KLDEIRLQGRLGSTARAPRWAIAYKYAPEEVNTRLVDIKVGVGRTGRVTPYAQVEPVTVA
GSEVEFATLHNQEVVKAKGVLIGDTVVLRKAGDVIPEILGPVADLRDGSEREFVMPAECP
ECGTPLKAMKEGDIDLRCPNARACPAQLRERVAYLAGRQCLDIEHFGGVVAAALTGPLEP
SEPPLVDEGDLFDLTVEKLLPITAYVLDPDSGLPKRDPKTGEEKIVTVFANKEGEPKKNT
LALLQHIEEAKTRPLARFINGLSIRYVGPVAAQALAREFRSIDRIEQATEEELASTDGVG
GTIATAVKEWFAVDWHREIVRKWKAAGVPLEDSSGGEDEGPRPLEGLTVVVTGTLENFTR
DGAKDALQSRGAKVTGSVSKKTSFVVVGDNPGSKYDKAMQLKVPVLNEDGFGVLLEQGAE
AATGVALSAEE
NT seq 2196 nt   +upstreamnt  +downstreamnt
gtggccggcgacaagcaagcggagaccacgagcgtgcccgccgaggcgcgcgagaagcac
gtgcagctcgctgagcagatcgaggagcaccgcttccggtactacgtgaaggacgccccc
gtcgtcagcgacgcggagttcgaccggctgctgcgcacccttcaggagctggaggagcgg
cacccggagctgcgcaccccgcagtccccgacccagaaggtcgccggttcctacgcgacc
gagttcacggccgtcgagcaccccacgcggatgctgtccctcgacaacaccttcaacgac
gaggagatggccgcctggaccgagcgcatcgcgaaggagctgggcgagcaggagtaccac
ttcctgtgcgagctgaaggtcgacggcctcgccgtcaacctcacctacgagcgcggccgg
ctcgtccgcgcggccacccgcggcgacggccgcaccggtgaggacatcacgcccaacgtc
cgcaccatcgccgagatccccgagcggctggcgggggaccaggtccccgacctcgtggag
atccgcggcgaggtctacttcccgatggacaagttccaggaactcaacgcccggttgaac
gaggcgggggacaagcccttcgccaacccgcgcaacgcggcggccggttcgctccgccag
aaggacccgcgggtcaccgccacccgcccgctgcacatggtcgtccacggcatcggcgtc
ctggagggctactcgggcatgacccgcctctcccaggcgtacggcctgctgaaggagtgg
ggcctgcccacctccccgcacaaccgcgtggtcgacggcctggacggcgtacgggagttc
atcgggtactacggcgagaaccggcactccgtcgcgcacgagatcgacggggtcgtcgtc
aagctcgacgagatccgcctccagggccggctcggctccaccgcccgcgcaccccgctgg
gccatcgcgtacaagtacgcgccggaggaggtcaacacccggctcgtcgacatcaaggtc
ggtgtcggccgcaccggccgcgtcacgccgtacgcgcaggtcgagccggtcaccgtggcc
ggcagcgaggtcgagttcgccacgctgcacaaccaggaggtcgtcaaggccaagggcgtg
ctcatcggcgacaccgtggtgctgcgcaaggccggtgacgtgatcccggagatcctcgga
ccggtcgccgacctgcgggacggcagcgagcgggagttcgtgatgccggccgagtgcccc
gagtgcgggacgccgctgaaggccatgaaggagggcgacatcgacctccgctgccccaac
gcgcgcgcctgcccggcccagttgcgcgagcgggtcgcctacctcgccggccgccagtgc
ctggacatcgagcacttcggcggagtcgtcgcggccgcgctgaccggcccgctggagccg
tccgagccgcccctggtggacgagggcgacctcttcgacctcaccgtcgagaagctgctg
cccatcacggcgtacgtcctcgacccggacagcggtctgcccaagcgcgaccccaagacc
ggcgaggagaagatcgtcacggtcttcgccaacaaggagggcgagcccaagaagaacacc
ctcgcgctgctgcaacacatcgaggaggccaagacccgcccgctggcccgcttcatcaac
ggcctctccatccggtacgtcggaccggtcgccgcccaggccctcgcccgcgagttccgc
tccatcgaccgcatcgagcaggccaccgaggaggagttggcgagcacggacggcgtgggc
ggcaccatcgccaccgccgtcaaggagtggttcgccgtggactggcaccgcgagatcgtc
cgcaagtggaaggcggccggggtccccctggaggacagctcggggggcgaggacgagggg
ccgcgcccactcgaagggctcaccgtcgtcgtcaccggcaccctggagaacttcacccgg
gacggcgccaaggacgccctgcagagcagaggcgccaaagtgaccggatcggtgtcgaag
aagacctcgttcgtcgtggtcggggacaaccccggttcgaagtacgacaaggcgatgcag
ctgaaggttccggttctgaacgaggacggtttcggcgtcctgctcgaacagggagccgaa
gcggccaccggtgtcgcgctttcggctgaggaatag

DBGET integrated database retrieval system