Streptomyces sp. WP-1: QHG49_11175
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Entry
QHG49_11175 CDS
T10379
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
strw Streptomyces sp. WP-1
Pathway
strw03030
DNA replication
strw03410
Base excision repair
strw03420
Nucleotide excision repair
strw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
strw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QHG49_11175 (ligA)
03410 Base excision repair
QHG49_11175 (ligA)
03420 Nucleotide excision repair
QHG49_11175 (ligA)
03430 Mismatch repair
QHG49_11175 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
strw03032
]
QHG49_11175 (ligA)
03400 DNA repair and recombination proteins [BR:
strw03400
]
QHG49_11175 (ligA)
Enzymes [BR:
strw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QHG49_11175 (ligA)
DNA replication proteins [BR:
strw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QHG49_11175 (ligA)
DNA repair and recombination proteins [BR:
strw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QHG49_11175 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QHG49_11175 (ligA)
MMR (mismatch excision repair)
DNA ligase
QHG49_11175 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QHG49_11175 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
Nlig-Ia
HHH
Zn_ribbon_CLPX_N
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
WKE69561
LinkDB
All DBs
Position
complement(2650202..2652400)
Genome browser
AA seq
732 aa
AA seq
DB search
MAGDKQAETTAVPAEARDRHAQLAEQIEEHRFRYYVKDAPVVSDAEFDQLLKTLEALEEQ
YPELRTPDSPTQKVAGSYATEFTAVEHRQRMLSLDNTFNDEELAAWADRIARELGDQKYH
FLCELKVDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIADIPDRLHGEKVPDLVE
IRGEVYFPMEKFLELNERLVAAGDKPFANPRNAAAGSLRQKDPRVTATRPLHMVVHGIGA
LEGFSGMTRLSQAYDLLKTWGLPTSTHNRVVDDLDGVREFIAHYDGEKRHSVEHEIDGAV
IKLDEIRLQGRLGSTARAPRWAIAYKYAPEEVNTKLIDIKVGVGRTGRVTPYAQVEPVTV
AGSEVEFATLHNQEVVKAKGVLIGDTVVIRKAGDVIPEILGPVVDLRDGGEREFVMPGEC
PECGTPLRPMKEGDIDLRCPNGRTCPAQLRERVSYLAGRECLDIEHFGGVAAAALTRPLE
PADPPLVDEGDLFDLTVEKLLPIKAYVLDPDSGLPKRDPKTGAEKVVTVFANQKGEPKKN
TLALLENIEAAKSRPLARFLNGLSIRHVGPVAAQALAREFRSVDRIEQATEEELAATDGV
GPIIAAAVKEWFTEEWHREIVRKWKAAGVPLEDQVSGEAEGPRPLEGLTVVVTGTLERFT
RDGAKEALQSRGAKVTGSVSKKTSFVVVGDNPGSKYDKAMQLKVPVLDEDGFGVLLEQGP
DAATEAALPTEE
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
gtggccggcgacaagcaggcggagaccacggcggtgcccgccgaggcccgcgacaggcac
gcgcagctggcggagcagatcgaggagcaccgcttccggtactacgtgaaggacgcaccc
gtcgtcagcgacgcggagttcgaccagctcctgaagaccctggaggcgctggaggagcag
taccccgaactgcgcacccccgactcgcccacccagaaggtggcggggtcgtacgcgacg
gagttcaccgcggtcgagcaccgccagcgcatgctctccctcgacaacaccttcaacgac
gaggaactggccgcctgggccgaccgcatcgcccgcgaactcggcgaccagaagtaccac
ttcctgtgcgagctgaaggtcgacggcctcgccgtcaacctcacgtacgagcacggccgc
ctcacccgcgccgccacccgcggcgacggccgcaccggcgaggacatcacgcccaacgtc
cggacgatcgcggacatccccgaccggctgcacggcgagaaggtccccgacctggtcgag
atccgcggcgaggtctacttcccgatggagaagttcctcgaactcaacgagcgcctggtc
gcggccggcgacaagcccttcgccaacccccgcaacgcggcggccggttcgctgcgccag
aaggacccccgggtcaccgccacccgcccgctgcacatggtggtgcacggcatcggcgcg
ctggagggcttcagcggcatgacccgcctgtcccaggcgtacgacctgctcaagacctgg
ggcctgcccacctccacgcacaaccgggtggtcgacgacctcgacggcgtccgcgaattc
atcgcgcactacgacggcgagaagcgccactccgtggagcacgagatcgacggcgccgtc
atcaagctggacgagatccgtctccagggccgcctcggctccaccgcgcgcgccccccgc
tgggccatcgcctacaagtacgcgccggaggaggtcaacaccaagctcatcgacatcaag
gtgggcgtcgggcgcaccggccgtgtcacgccgtacgcgcaggtcgagccggtcaccgtc
gcgggcagcgaggtggagttcgccaccctgcacaaccaggaggtcgtcaaggccaagggc
gtgctgatcggcgacaccgtcgtgatccgcaaggccggcgatgtcatcccggagatcctc
ggcccggtggtcgacctgcgcgacggcggcgagcgggagttcgtgatgcccggcgagtgc
cccgagtgcggcaccccgctgcggcccatgaaggagggcgacatcgacctccgctgcccc
aacgggcgtacctgcccggcccagttgcgcgagcgcgtctcctatctcgcgggccgcgag
tgcctggacatcgagcacttcggcggggtggccgcggcggccctcacccgcccgctggag
ccggccgacccgccgctggtggacgagggcgacctgttcgacctgacggtggagaagctg
ctgcccatcaaggcgtacgtcctggacccggacagcgggctgcccaagcgcgaccccaag
accggtgcggagaaggtcgtcacggtcttcgccaaccagaagggcgagccgaagaagaac
accctcgcgctgctggagaacatcgaggcggccaagtcccgtccgctggcccgttttctg
aacggactgtccatccggcacgtcggcccggtcgccgcccaggccctcgcccgcgagttc
cgctccgtcgaccgcatcgaacaggccacggaggaggagctggcggccaccgacggcgtc
ggccccatcatcgcggccgcggtcaaggagtggttcaccgaggagtggcaccgcgagatc
gtccgcaagtggaaggccgcgggcgtcccgttggaggaccaggtcagcggggaggcggag
ggtccgcgtccgctggaggggctcaccgtggtggtcaccggcacgctggagaggttcacc
cgggacggcgccaaggaggcactccagagccggggcgccaaagtgaccggctcggtttcg
aagaagacctctttcgtggtcgttggtgacaatccgggatcgaaatacgacaaggccatg
caattgaaggttccggtgctcgatgaggacggattcggcgtcctgttggagcagggcccg
gacgccgcgacggaggccgcgcttccgaccgaggagtag
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integrated database retrieval system
