Streptomyces sp. S8: A6E92_07915
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Entry
A6E92_07915 CDS
T11600
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
strx Streptomyces sp. S8
Pathway
strx03030
DNA replication
strx03410
Base excision repair
strx03420
Nucleotide excision repair
strx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
strx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
A6E92_07915
03410 Base excision repair
A6E92_07915
03420 Nucleotide excision repair
A6E92_07915
03430 Mismatch repair
A6E92_07915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
strx03032
]
A6E92_07915
03400 DNA repair and recombination proteins [BR:
strx03400
]
A6E92_07915
Enzymes [BR:
strx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
A6E92_07915
DNA replication proteins [BR:
strx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
A6E92_07915
DNA repair and recombination proteins [BR:
strx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
A6E92_07915
NER (nucleotide excision repair)
GGR (global genome repair) factors
A6E92_07915
MMR (mismatch excision repair)
DNA ligase
A6E92_07915
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
A6E92_07915
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
HHH
Zn_ribbon_TFIIB
zf-IS66
DUF6729
Motif
Other DBs
NCBI-ProteinID:
ARI52110
LinkDB
All DBs
Position
complement(2022869..2025124)
Genome browser
AA seq
751 aa
AA seq
DB search
MAGEERVEQESTVPADVRETHALLAEQVEEHRFRYYVKDQPVVSDAEFDRLMRSLEALEE
EYPQLRTPDSPTQKVAGPYVTEFTSVEHRERMLSLDNAFDADDLASWAERVAKEVGTPDH
HFLCELKVDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPHRLQGEDLPALV
EIRGEVFFPMEAFEELNARLVAADDKPFANPRNAAAGSLRQKDPKVTASRPLHMVVHGIG
AHEGLTLDRLSQAYDLLHSWGLPTARYNKVVDSLDGVREFIAYYGDHRHSVEHEIDGVVV
KLDEIPLQGRLGSTSRAPRWAIAWKYAPEEVNTKLVNIRVGVGRTGRVTPYAQVEPVEVA
GSEVEFATLHNQEVVKAKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGTEKPFEMPTHCP
ECGTELRPMKEADIDLRCPNARTCPAQLRERIFYLAGRKSLDIDHFGYVAAAALTCPLEP
AEPVLKDESGLFDLTIEQLLPIRAYVLDQDSGLPKRDPKTGEEKIATVFANKQGEPKKNA
VAMLEGIAAAKEAPLARVLTGLSIRHVGPVAAQELARQFRSIDRIEEATEEELADADGVG
PTIAASVKQWFAEEWHREIVRRWREAGVRMADEGADEEQGPRPLEGLTVVVTGTLTGYTR
DGAKEALQALGAKVTGSVSKKTAFVVVGDNPGSKYDKAMQLKVPVLDEDGFAVLLEQGPD
AAREAALPLPEPVAEAGPGAAPGPEAEAAAE
NT seq
2256 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcgaagagcgggtggagcaggagagcacggttccggcggacgtgcgggagacc
cacgcgctcctggccgagcaggtcgaggagcaccgcttccggtattacgtgaaggaccag
ccggtcgtcagcgacgccgagttcgaccggctgatgcgctccctggaggccctggaggag
gagtacccccagctccgcaccccggactccccgacccagaaggtcgcggggccctatgtc
acggagttcacctccgtcgagcaccgcgagcgcatgctctccctggacaacgccttcgac
gccgacgacctggcctcctgggccgagcgcgtcgccaaggaggtcggcacgcccgaccac
cacttcctgtgcgagctgaaggtggacgggctcgccgtcaacctcacctacgagcacggc
cggctgacccgggcggcgacccgcggtgacggccgcaccggcgaggacatcacgcccaac
gtccggacgatcgcggagatcccgcaccgcctgcagggcgaggacctccccgcactggtc
gagatccggggcgaggtcttcttcccgatggaggccttcgaggagctgaacgcccgactg
gtggccgccgacgacaagcccttcgccaacccgcgcaacgcggcggccggttcgctgcgc
cagaaggacccgaaggtcaccgcctcccgcccgctccacatggtggtccacggcatcggc
gcccacgagggcctcaccctcgaccgcctctcccaggcgtacgatctcctgcactcctgg
ggcctgcccaccgcccggtacaacaaggtcgtcgactccctcgacggcgtacgggagttc
atcgcgtactacggcgaccaccggcactccgtggagcacgagatcgacggggtcgtcgtc
aagctcgacgagatcccgctccaggggcggctgggctccacctcgcgcgccccccgctgg
gccatcgcctggaagtacgcccccgaggaggtcaacaccaagctggtcaacatccgcgtc
ggtgtcggccgcaccggtcgcgtcaccccgtacgcccaggtcgagccggtcgaagtggcc
ggttccgaggtcgagttcgccaccctccacaaccaggaggtggtcaaggccaagggtgtc
ctgatcggtgacaccgtggtgctgcgcaaggcgggcgacgtcatcccggagatcctcggc
cccgtcgtcgatctgcgcgacggcaccgagaagccgttcgagatgccgacgcactgcccc
gagtgcggcacggagctgcgcccgatgaaggaggccgacatcgacctccgctgccccaac
gcccgtacgtgtcccgcacagttgcgcgagcgcatcttctacctcgccgggcgcaagagc
ctggacatcgaccacttcggctatgtggccgccgccgccctgacctgccccctggagccc
gccgagccggtcctgaaggacgagagcggcctgttcgacctcaccatcgagcagctgctg
ccgatccgggcgtacgtcctggaccaggacagcgggctgcccaagcgggacccgaagacc
ggggaggagaagatcgcgacggtcttcgccaacaagcagggcgagccgaagaagaacgcg
gtcgccatgctggagggcatcgccgccgcgaaggaggccccgctggcccgggtcctcacc
ggcctctccatccgccacgtcggacccgtcgccgcccaggagctggcccgccagttccgc
tccatcgaccggatcgaggaggccaccgaggaggagctggccgacgccgacggcgtcggc
cccaccatcgccgcctccgtcaagcagtggttcgccgaggagtggcaccgcgagatcgta
cggaggtggcgcgaggccggggtcaggatggccgacgagggcgccgacgaggaacagggc
ccccgccccctcgaagggctcaccgtcgtcgtcaccggcaccctcaccggctacaccagg
gacggcgccaaggaggcgctccaggctctgggcgcgaaggtcaccggctcggtgtcgaag
aagaccgcgttcgtggtcgtcggggacaaccccggctccaagtacgacaaggccatgcag
ctgaaggtccccgtcctcgacgaggacggcttcgccgtcctgctggaacagggcccggac
gccgcccgggaggcagccctgccgctaccggagccggtggcggaagcggggccgggggcg
gcgcccggaccggaggcggaggccgctgcggagtaa
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