KEGG   Streptomyces sp. Sge12: B6R96_11120
Entry
B6R96_11120       CDS       T11356                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
stsg  Streptomyces sp. Sge12
Pathway
stsg03030  DNA replication
stsg03410  Base excision repair
stsg03420  Nucleotide excision repair
stsg03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:stsg00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    B6R96_11120
   03410 Base excision repair
    B6R96_11120
   03420 Nucleotide excision repair
    B6R96_11120
   03430 Mismatch repair
    B6R96_11120
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:stsg03032]
    B6R96_11120
   03400 DNA repair and recombination proteins [BR:stsg03400]
    B6R96_11120
Enzymes [BR:stsg01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     B6R96_11120
DNA replication proteins [BR:stsg03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     B6R96_11120
DNA repair and recombination proteins [BR:stsg03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     B6R96_11120
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     B6R96_11120
   MMR (mismatch excision repair)
    DNA ligase
     B6R96_11120
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      B6R96_11120
SSDB
Motif
Pfam: DNA_ligase_aden OB_DNA_ligase HHH_2 BRCT DNA_ligase_ZBD HHH_5 PTCB-BRCT Nlig-Ia HHH Zn_ribbon_TFIIB
Other DBs
NCBI-ProteinID: ARE74424
LinkDB
Position
complement(2583239..2585440)
AA seq 733 aa
MAAEQQDTAVPAAVRDQHALLAEQIEEHRFRYYVNDQPVVSDAEFDKLLRSLEALEEQYP
ELRTPDSPTQKVAGAYETDFASVEHRERMLSLDNAFDDEELAAWAERVARDVNTSDYHYL
CELKVDGLAVNLTYENGRLTRAATRGDGRTGEDITPNVRTIAEIPDRLKGDRIPALVEIR
GEVYFPMEKFQELNARLVEAEGKPFANPRNAAAGSLRQKDPKVTASRPLHMVVHGIGARE
GFEIQRQSQAYELLHEWGLPTAQHNKVVSTLAEVRDFIADFGVNRHSVEHEIDGVVVKLD
EISLQGRLGSTARAPRWAIAWKYAPEEVNTKLIDIKVGVGRTGRVTPYAQVEPVRVAGSE
VEFATLHNQEVVKAKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGSEREFVMPAICPACG
TELRPMKEGDIDVRCPNGQTCPAQLRERVAYLAGRQSLDIENFGMVAAAALTGPLEPAQP
PLLDEGDLFGLTIEQLLPIKAYVLDPDSGLPKRDPKTGEEKIVTVFANQKGEPKKNALAM
LEHIAAAKERPLARIINGLSIRHVGPVAAEALAREFRSIERIEQATEEELTATEGVGAII
AASLKEWFAVDWHQEILRKWREAGVRMEEEGSAEDEGPRPLEGLTVVVTGTLQSHTRDGA
KDALQSRGAKVTGSVSKKTSFVVVGDNPGSKYDKAVQLKLAILDDAGFAVLLEQGPDAAR
EVALPVDGGGEGE
NT seq 2202 nt   +upstreamnt  +downstreamnt
atggcagccgaacagcaggacacggcagtaccggcggcggtgcgtgatcagcacgcactg
ctggccgagcagatcgaggagcaccgcttccggtactacgtgaacgaccagccggtcgtc
agcgacgccgagttcgacaagctgctgcgctcgctggaggcgctggaggagcagtacccg
gagctgcgtacgcccgactcgcccacccagaaggtggccggggcgtacgagacggacttc
gcctccgtcgagcaccgggagcgcatgctctccctcgacaacgccttcgacgacgaggaa
ctggcggcctgggccgagcgggtggcccgggacgtgaacacctcggactaccactacctg
tgcgagctcaaggtggacggcctcgccgtcaacctcacctacgagaacggccgtctcacc
cgggcggccacccgcggcgacggccgcaccggtgaggacatcacgcccaacgtccgcacc
atcgccgagatcccggaccggctgaagggcgaccggatcccggccctggtcgagatccgc
ggcgaggtctacttcccgatggagaagttccaggagctcaatgcgcgtctggtggaggcg
gagggcaagcccttcgccaacccgcgcaacgcggccgccggttcgctgcggcagaaggac
cccaaggtcaccgcgagccgcccgctgcacatggtcgtccacggcatcggcgcccgcgag
ggcttcgagatccagcgccagtcgcaggcgtacgagctgctgcacgagtggggcctgccg
accgcgcagcacaacaaggtggtctccacgctcgccgaggtccgggatttcatcgcggac
ttcggggtgaaccggcactcggtggagcacgagatcgacggcgtggtcgtcaagctcgac
gagatctccctccaggggcggctcggctccacggcgcgcgccccgcggtgggccatcgcc
tggaagtacgcgcccgaagaggtcaacaccaagctgatcgacatcaaggtcggcgtcggc
cgcaccggccgggtgaccccctacgcgcaggtggagccggtgagggtggcgggctccgag
gtggagttcgcgaccctgcacaaccaggaggtcgtcaaggccaagggcgtcctcatcggg
gacaccgtggtcctgcgcaaggcgggcgacgtcatccccgagatcctcggcccggtggtg
gacctgcgcgacggcagcgagcgggagttcgtgatgccggccatctgccccgcgtgcggg
acggagctgcggccgatgaaggagggggacatcgatgtccgctgccccaacggccagacc
tgcccggcccagttgcgcgagcgggtcgcctacctggccggccgccagtcgctggacatc
gagaacttcggcatggtggcggcggccgcgctgaccggcccgctggagccggcgcagccg
ccgctgctggacgagggcgacctcttcggcctgaccatcgagcagctgctgcccatcaag
gcgtacgtcctggacccggacagcggtctgcccaagcgggacccgaagacgggcgaggag
aagatcgtcacggtcttcgccaaccagaagggcgagccgaagaagaacgcgctggccatg
ctggagcacatcgccgccgccaaggagcgcccgctcgcccgcatcatcaacggcctgtcg
atccgtcatgtgggaccggtcgccgccgaggcgctcgcccgcgagttccgctcgatcgag
cgcatcgagcaggccaccgaggaggagctcaccgcgaccgagggggtcggcgcgatcatc
gccgcctccctcaaggagtggttcgccgtcgactggcaccaggagatcctgcgcaagtgg
cgggaggccggggtccggatggaggaggaaggttccgccgaggacgaggggccgcggccg
ctggaggggctgaccgtcgtcgtcaccggcacgctgcagagccacacccgggacggcgcg
aaggacgccctgcagagccgtggagccaaggtcaccggatccgtgtcgaagaagacctcc
ttcgtcgtggtcggtgacaaccccggttcgaagtacgacaaggccgtgcagttgaagctc
gccatcctcgacgacgccgggttcgcggtgctgctggagcagggccccgacgcggcacgc
gaggtcgcgctcccggtggacggcgggggcgaaggggagtag

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