Streptomyces sp. SM17: B9S66_23100
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Entry
B9S66_23100 CDS
T11645
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
stsm Streptomyces sp. SM17
Pathway
stsm03030
DNA replication
stsm03410
Base excision repair
stsm03420
Nucleotide excision repair
stsm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
stsm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
B9S66_23100
03410 Base excision repair
B9S66_23100
03420 Nucleotide excision repair
B9S66_23100
03430 Mismatch repair
B9S66_23100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
stsm03032
]
B9S66_23100
03400 DNA repair and recombination proteins [BR:
stsm03400
]
B9S66_23100
Enzymes [BR:
stsm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
B9S66_23100
DNA replication proteins [BR:
stsm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
B9S66_23100
DNA repair and recombination proteins [BR:
stsm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
B9S66_23100
NER (nucleotide excision repair)
GGR (global genome repair) factors
B9S66_23100
MMR (mismatch excision repair)
DNA ligase
B9S66_23100
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
B9S66_23100
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
HHH
DUF8512
Zn_ribbon_CLPX_N
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
AWL34886
LinkDB
All DBs
Position
5236346..5238532
Genome browser
AA seq
728 aa
AA seq
DB search
MAGEQQNADVPADARERHKHLAEQVEEHRFRYYVNDQPVVSDAEFDRQLRALTQLEEQYP
PLRTPDSPTQKVAGQYETEFTSVQHRERMLSLDNAFDDEELAAWAERVAKEVGAPGYHFL
CELKVDGLAVNLTYEHGRLTRAATRGDGRVGEDITPNVRTISDIPERLHGDDLPALVEIR
GEVFFPMEEFEKLNARLVEAGEKPFANPRNAAAGSLRQKDPRVTATRPLHMVVHGIGARE
GFTIDCLSHAYDLLRSWGLPTARHNKVVEGLDGVRAFITYYGDHRHSVEHEIDGVVVKLD
EVPLQGRLGSTSRAPRWAIAWKYPPEEVNSRLIDIRVGVGRTGRVTPYAQVEPVTVAGSE
VEFATLHNQDVVRAKGVLIGDTVVLRKAGDVIPEILGPVADLRDGTERPFTMPAECPECG
TPLKPMKEGDIDLRCPNARSCPAQLRERIYYLAGRKCLDIENFGYVAATALTQPLEPSEP
PLRDEGDLFDLTVDQLLPIRSYVLDPDSGLPKRDPKTGEEKIVTFFANKQGEAKKNTLAM
LDHIEAAKQRPLARVLTGLSIRHVGPVAAQALAREFRSIERIEAATEEELAQTEGVGPTI
AASLKSWFAEEWHREIVRKWREAGVRMEEESTGEDEGPRPLEGLTVVVTGTLEHHTRDNA
KEALQNQGAKVTGSVSKKTSFVVVGDNPGSKYDKAMQAKVPVLDEAGFAVLLGQGPDAAR
EVALPLPE
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
gtggccggcgaacagcagaacgcagacgttcccgcggacgcgcgggagcgccacaagcac
ctcgccgaacaggtcgaggagcaccgcttccgctactacgtcaacgaccagcccgtcgtc
agcgacgccgagttcgaccggcagctgcgcgccctcacccaactggaggagcagtacccg
ccgctgcgcacccccgactcgcccacccagaaggtcgccgggcagtacgagacggagttc
acctccgtccagcaccgcgagcggatgctctccctcgacaacgccttcgacgacgaggaa
ctcgccgcctgggccgagcgcgtcgccaaggaggtcggcgcccccggctaccacttcctg
tgcgagctgaaggtcgacggcctcgccgtcaacctcacctacgagcacggccgcctcacc
cgcgccgccacccgcggcgacggccgcgtcggcgaggacatcacccccaacgtccgcacc
atctcggacatccccgagcggctgcacggcgacgacctccccgccctcgtggagatccgc
ggcgaggtcttcttcccgatggaggagttcgagaagctcaacgcccgcctcgtcgaagcc
ggcgagaagcccttcgccaacccgcgcaacgccgccgccggctccctgcgccagaaggac
ccccgggtcaccgccacccgcccgctgcacatggtcgtccacggcatcggcgcccgcgag
ggcttcaccatcgactgcctctcccacgcctacgacctgctgcgctcctggggcctgccc
accgcccgccacaacaaggtggtcgaaggactcgacggcgtccgcgcgttcatcacgtac
tacggcgaccaccggcactccgtcgagcacgagatcgacggcgtcgtcgtcaagctcgac
gaggtccccctccagggccgcctcggctccacctcccgcgccccccgctgggccatcgcc
tggaagtacccgcccgaggaggtcaacagccgcctcatcgacatccgcgtcggcgtcggc
cgcaccggccgcgtcaccccgtacgcccaggtcgagccggtcaccgtggccggctccgag
gtcgagttcgccaccctgcacaaccaggacgtggtccgcgccaagggcgtcctcatcggc
gacaccgtcgtcctgcgcaaggccggcgacgtcatcccggagatcctcggccccgtcgcc
gacctccgcgacggcaccgagcgccccttcaccatgccggccgagtgccccgagtgcggc
accccgctgaagccgatgaaggagggcgacatcgacctccgctgccccaacgcccgctcc
tgccccgcccagttgcgggagcggatctactacctcgcgggccgcaagtgcctcgacatc
gagaacttcggctacgtcgccgccaccgccctcacccagcccctggagccctccgagccc
ccgctgcgcgacgagggcgacctcttcgacctcaccgtcgaccagctcctgcccatccgc
tcctacgtcctcgacccggacagcggcctgcccaagcgcgacccgaagaccggcgaggag
aagatcgtcaccttcttcgccaacaagcagggcgaggcgaagaagaacaccctcgccatg
ctcgaccacatcgaggcggccaagcagcgccccctcgcccgcgtcctcaccggcctctcc
atccgccacgtcggcccggtcgccgcccaggcgctggcccgcgagttccgctccatcgag
cggatcgaggccgccaccgaggaggagctggcgcagaccgaaggcgtcggcccgaccatc
gccgcctctctcaagagctggttcgccgaggagtggcaccgcgagatcgtccgcaagtgg
cgcgaggccggcgtccggatggaggaggagtccaccggcgaggacgagggcccccgcccg
ctggagggcctcaccgtcgtcgtcaccggcaccctcgaacaccacacccgggacaacgcc
aaggaagccctccagaaccaaggcgcgaaagtgacaggttctgtctcgaagaagacttcg
ttcgtggtcgtcggcgacaaccccggctccaagtacgacaaggccatgcaggccaaggtg
cccgtcctggacgaggcgggcttcgccgtcctcctcggacaaggccccgacgccgcacgt
gaagtggcacttccgcttcccgagtga
DBGET
integrated database retrieval system
