KEGG   Streptomyces tsukubensis: B7R87_24480
Entry
B7R87_24480       CDS       T07155                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
stsu  Streptomyces tsukubensis
Pathway
stsu03030  DNA replication
stsu03410  Base excision repair
stsu03420  Nucleotide excision repair
stsu03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:stsu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    B7R87_24480
   03410 Base excision repair
    B7R87_24480
   03420 Nucleotide excision repair
    B7R87_24480
   03430 Mismatch repair
    B7R87_24480
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:stsu03032]
    B7R87_24480
   03400 DNA repair and recombination proteins [BR:stsu03400]
    B7R87_24480
Enzymes [BR:stsu01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     B7R87_24480
DNA replication proteins [BR:stsu03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     B7R87_24480
DNA repair and recombination proteins [BR:stsu03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     B7R87_24480
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     B7R87_24480
   MMR (mismatch excision repair)
    DNA ligase
     B7R87_24480
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      B7R87_24480
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD PTCB-BRCT HHH_5 Nlig-Ia Zn_ribbon_TFIIB
Other DBs
NCBI-ProteinID: AZK98638
LinkDB
Position
5824379..5826565
AA seq 728 aa
MAEVQEGSGLPAQAREEHARLAGEIDEHRFRYYVKDQPVVSDGEFDALMRSLEELEERYP
ALRTPDSPSQKVAGAYETDLAKVEHRERMLSLDNAFDEEELAAWAERIARDVGTPDFHFL
CELKVDGLAVNLTYEKGKLVRAATRGDGRVGEDITPNIRTITDIPERLRGDRVPELVEIR
GEVYFPMDAFEELNARRVAAGEQPYANPRNSASGSLRQKDPRVTATLPLHMVVHGIGARD
GFTIDCLSHAYELLHEWGLPTARHNKVVDSLDGVREFIAHYGKNRHSMEHEIDGVVVKLD
EIPLQGRLGSTSRAPRWAIAWKYPPEEVNTKLVNIRVGVGRTGRVTPYAQVEPVKVAGSE
VEFATLHNQDVVRAKGVLIGDTVVLRKAGDVIPEILGPVADLRDGSEREFVMPAECPECG
TALRPMKEGDVDLRCPNARSCPAQLRERLFYLAGRKALDIDHFGYVTAAALTRPLEPAEP
PLKDEGDLFGLGVEQLLPIVAYVLDQDSGLPKRDPKTGEEKTATVFANQQGEAKKNTLAL
LESIEAAKQRPLARILTGLSIRHVGPVAAEALAREFRSIDRIEQAGEEELAATEGVGAII
AASLKQWFAEEWHQEILRKWRAAGVRMEEEGSDEEQGPRPLEGLTVVVTGTLENYTRDGA
KEALQRIGAKVTGSVSKKTAFVVVGENPGSKYDKAMQLKVPVLNEDGFVVLLEQGPDAAR
EAAVPQEA
NT seq 2187 nt   +upstreamnt  +downstreamnt
ctggcggaggtgcaggagggctccggcctgcccgcgcaggcgcgcgaggagcatgcgcgg
ctcgccggggagatcgacgagcaccgcttccggtactacgtgaaggaccagcccgtcgtc
agcgacggggagttcgacgcactgatgcggtccctggaggagctggaggagcggtatccg
gcgctgcggacccccgactcgccgtcccagaaggtggccggcgcctatgagacggacctg
gcgaaggtcgaacaccgggagcggatgctctccctcgacaacgccttcgacgaggaggag
ctggcggcctgggccgagcggatcgcccgtgacgtcggcacccccgacttccacttcctc
tgcgaactgaaggtcgacgggctcgccgtcaacctgacgtacgagaaggggaagctggtc
cgcgcggcgacccgcggcgacggccgcgtcggagaggacatcacgcccaatatccgcacc
atcaccgatatccccgagcggctccggggggaccgggtccccgagctggtggagatccgc
ggcgaggtctacttccccatggacgccttcgaggagctgaacgcccgccgggtcgccgcc
ggggagcagccgtacgccaacccccgcaactccgcctccggttcgctgcggcagaaggac
ccccgggtcaccgcgaccctgccgctgcacatggtggtccacgggatcggggcccgggac
ggcttcaccatcgactgcctctcccacgcctacgaactgctgcatgagtggggcctgccg
accgcccgtcacaacaaggtcgtcgactccctcgacggcgtccgcgagttcatcgcccac
tacggcaagaaccgccactccatggagcacgagatcgacggggtcgtcgtcaagctcgac
gagatcccgctccagggacggctgggctccacctcgcgcgccccgcgctgggccatcgcc
tggaagtatccgccggaggaggtcaacaccaagctcgtcaacatccgcgtcggagtgggc
cgcaccgggcgggtcacgccctacgcccaggtcgagccggtgaaggtggccgggtccgag
gtcgagttcgccaccctccacaaccaggacgtggtgcgggccaagggcgtcctcatcggc
gacacggtcgtgctgcgcaaggccggtgacgtcatcccggagatcctcggcccggtcgcg
gacctccgggacggctcggagcgggagttcgtgatgcccgccgaatgccccgagtgcggt
acggcgctgcgccccatgaaggagggcgacgtcgatctgcgctgccccaacgcccgttcc
tgcccggcccagctgcgcgagcggctgttctacctcgcgggccgcaaggccctcgacatc
gaccacttcggctatgtgacggccgccgccctcaccagacccctggagccggccgagccg
ccgctgaaggacgagggcgatctgttcggcctcggcgtcgagcagctgctgccgatcgtg
gcgtacgtcctcgaccaggacagcggtctgcccaagcgggacccgaagacgggcgaggag
aagaccgccaccgtcttcgccaaccagcagggcgaggccaagaagaacaccctggcgctg
ctggagagcatcgaggcggccaaacagcggcccctcgcccggatcctcaccggactgtcg
atccgccacgtcggtccggtcgcggcggaggcgctcgcccgggagttccggtcgatcgac
cgcatcgagcaggccggcgaggaggagctggccgccaccgagggcgtcggggcgatcatc
gcggcctccctcaagcaatggttcgccgaggagtggcaccaggagatcctccgcaagtgg
cgggcggccggggtgcggatggaggaggagggctccgacgaggagcagggcccgcggccc
ctcgaaggcctgaccgtcgtcgtcaccggaaccctggagaactacaccagggatggcgcg
aaagaagccctccagagaatcggcgcgaaagtgaccggatccgtttccaagaagacggcg
ttcgtggtggtcggggagaaccccggctccaagtacgacaaggcgatgcagctcaaggtc
cccgttctgaacgaggacggcttcgtcgtcctcctggagcaggggcccgatgcggctcgt
gaggcggcagtgccgcaggaggcgtga

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