Streptomyces tsukubensis: B7R87_24480
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Entry
B7R87_24480 CDS
T07155
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
stsu
Streptomyces tsukubensis
Pathway
stsu03030
DNA replication
stsu03410
Base excision repair
stsu03420
Nucleotide excision repair
stsu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
stsu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
B7R87_24480
03410 Base excision repair
B7R87_24480
03420 Nucleotide excision repair
B7R87_24480
03430 Mismatch repair
B7R87_24480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
stsu03032
]
B7R87_24480
03400 DNA repair and recombination proteins [BR:
stsu03400
]
B7R87_24480
Enzymes [BR:
stsu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
B7R87_24480
DNA replication proteins [BR:
stsu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
B7R87_24480
DNA repair and recombination proteins [BR:
stsu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
B7R87_24480
NER (nucleotide excision repair)
GGR (global genome repair) factors
B7R87_24480
MMR (mismatch excision repair)
DNA ligase
B7R87_24480
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
B7R87_24480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
Nlig-Ia
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
AZK98638
LinkDB
All DBs
Position
5824379..5826565
Genome browser
AA seq
728 aa
AA seq
DB search
MAEVQEGSGLPAQAREEHARLAGEIDEHRFRYYVKDQPVVSDGEFDALMRSLEELEERYP
ALRTPDSPSQKVAGAYETDLAKVEHRERMLSLDNAFDEEELAAWAERIARDVGTPDFHFL
CELKVDGLAVNLTYEKGKLVRAATRGDGRVGEDITPNIRTITDIPERLRGDRVPELVEIR
GEVYFPMDAFEELNARRVAAGEQPYANPRNSASGSLRQKDPRVTATLPLHMVVHGIGARD
GFTIDCLSHAYELLHEWGLPTARHNKVVDSLDGVREFIAHYGKNRHSMEHEIDGVVVKLD
EIPLQGRLGSTSRAPRWAIAWKYPPEEVNTKLVNIRVGVGRTGRVTPYAQVEPVKVAGSE
VEFATLHNQDVVRAKGVLIGDTVVLRKAGDVIPEILGPVADLRDGSEREFVMPAECPECG
TALRPMKEGDVDLRCPNARSCPAQLRERLFYLAGRKALDIDHFGYVTAAALTRPLEPAEP
PLKDEGDLFGLGVEQLLPIVAYVLDQDSGLPKRDPKTGEEKTATVFANQQGEAKKNTLAL
LESIEAAKQRPLARILTGLSIRHVGPVAAEALAREFRSIDRIEQAGEEELAATEGVGAII
AASLKQWFAEEWHQEILRKWRAAGVRMEEEGSDEEQGPRPLEGLTVVVTGTLENYTRDGA
KEALQRIGAKVTGSVSKKTAFVVVGENPGSKYDKAMQLKVPVLNEDGFVVLLEQGPDAAR
EAAVPQEA
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
ctggcggaggtgcaggagggctccggcctgcccgcgcaggcgcgcgaggagcatgcgcgg
ctcgccggggagatcgacgagcaccgcttccggtactacgtgaaggaccagcccgtcgtc
agcgacggggagttcgacgcactgatgcggtccctggaggagctggaggagcggtatccg
gcgctgcggacccccgactcgccgtcccagaaggtggccggcgcctatgagacggacctg
gcgaaggtcgaacaccgggagcggatgctctccctcgacaacgccttcgacgaggaggag
ctggcggcctgggccgagcggatcgcccgtgacgtcggcacccccgacttccacttcctc
tgcgaactgaaggtcgacgggctcgccgtcaacctgacgtacgagaaggggaagctggtc
cgcgcggcgacccgcggcgacggccgcgtcggagaggacatcacgcccaatatccgcacc
atcaccgatatccccgagcggctccggggggaccgggtccccgagctggtggagatccgc
ggcgaggtctacttccccatggacgccttcgaggagctgaacgcccgccgggtcgccgcc
ggggagcagccgtacgccaacccccgcaactccgcctccggttcgctgcggcagaaggac
ccccgggtcaccgcgaccctgccgctgcacatggtggtccacgggatcggggcccgggac
ggcttcaccatcgactgcctctcccacgcctacgaactgctgcatgagtggggcctgccg
accgcccgtcacaacaaggtcgtcgactccctcgacggcgtccgcgagttcatcgcccac
tacggcaagaaccgccactccatggagcacgagatcgacggggtcgtcgtcaagctcgac
gagatcccgctccagggacggctgggctccacctcgcgcgccccgcgctgggccatcgcc
tggaagtatccgccggaggaggtcaacaccaagctcgtcaacatccgcgtcggagtgggc
cgcaccgggcgggtcacgccctacgcccaggtcgagccggtgaaggtggccgggtccgag
gtcgagttcgccaccctccacaaccaggacgtggtgcgggccaagggcgtcctcatcggc
gacacggtcgtgctgcgcaaggccggtgacgtcatcccggagatcctcggcccggtcgcg
gacctccgggacggctcggagcgggagttcgtgatgcccgccgaatgccccgagtgcggt
acggcgctgcgccccatgaaggagggcgacgtcgatctgcgctgccccaacgcccgttcc
tgcccggcccagctgcgcgagcggctgttctacctcgcgggccgcaaggccctcgacatc
gaccacttcggctatgtgacggccgccgccctcaccagacccctggagccggccgagccg
ccgctgaaggacgagggcgatctgttcggcctcggcgtcgagcagctgctgccgatcgtg
gcgtacgtcctcgaccaggacagcggtctgcccaagcgggacccgaagacgggcgaggag
aagaccgccaccgtcttcgccaaccagcagggcgaggccaagaagaacaccctggcgctg
ctggagagcatcgaggcggccaaacagcggcccctcgcccggatcctcaccggactgtcg
atccgccacgtcggtccggtcgcggcggaggcgctcgcccgggagttccggtcgatcgac
cgcatcgagcaggccggcgaggaggagctggccgccaccgagggcgtcggggcgatcatc
gcggcctccctcaagcaatggttcgccgaggagtggcaccaggagatcctccgcaagtgg
cgggcggccggggtgcggatggaggaggagggctccgacgaggagcagggcccgcggccc
ctcgaaggcctgaccgtcgtcgtcaccggaaccctggagaactacaccagggatggcgcg
aaagaagccctccagagaatcggcgcgaaagtgaccggatccgtttccaagaagacggcg
ttcgtggtggtcggggagaaccccggctccaagtacgacaaggcgatgcagctcaaggtc
cccgttctgaacgaggacggcttcgtcgtcctcctggagcaggggcccgatgcggctcgt
gaggcggcagtgccgcaggaggcgtga
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integrated database retrieval system