Streptomyces tubercidicus: STRTU_002055
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Entry
STRTU_002055 CDS
T09099
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
stud
Streptomyces tubercidicus
Pathway
stud03030
DNA replication
stud03410
Base excision repair
stud03420
Nucleotide excision repair
stud03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
stud00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
STRTU_002055 (ligA)
03410 Base excision repair
STRTU_002055 (ligA)
03420 Nucleotide excision repair
STRTU_002055 (ligA)
03430 Mismatch repair
STRTU_002055 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
stud03032
]
STRTU_002055 (ligA)
03400 DNA repair and recombination proteins [BR:
stud03400
]
STRTU_002055 (ligA)
Enzymes [BR:
stud01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
STRTU_002055 (ligA)
DNA replication proteins [BR:
stud03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
STRTU_002055 (ligA)
DNA repair and recombination proteins [BR:
stud03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
STRTU_002055 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
STRTU_002055 (ligA)
MMR (mismatch excision repair)
DNA ligase
STRTU_002055 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
STRTU_002055 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
HHH
Motif
Other DBs
NCBI-ProteinID:
WAU11795
LinkDB
All DBs
Position
complement(2433280..2435496)
Genome browser
AA seq
738 aa
AA seq
DB search
MAGEQHAAESKVPAEAREKHAQLAEQIEEHRFRYYVKDAPVISDAEFDKLLRSLEALEDE
HAELRTPDSPTQKVAGAYATEFTEVEHRERMLSLDNAFDDEELAGWAERIAGELGGDPKS
AKYHFLCELKVDGLAVNLTYEQGRLTRAATRGDGRTGEDITPNVRTIAEIPHRLKGERIP
DLVEVRGEVFFPMEKFLALNERLVADGKPPFANPRNAAAGSLRQKDPKVTASRPLHMVVH
GVGAREGLEIERLSEAYDLLKEWGLPTATHNKVVDSLAAVREFIDHYGDAETRRTAVEHE
IDGVVVKLDEIRLQGRLGSTSRAPRWAIAWKYPPEEVNTKLVDIRVGVGRTGRVTPYAVV
EPVTVAGSEVEFATLHNQDVVKAKGVFIGDTVVIRKAGDVIPEILGPVADLRDGSEREFV
MPAECPECGTALQPAKEGDIDLRCPNARACPAQIRERLFYLAGRKCLDIENFGYVAATAL
SQPLEPSEPPLRDEGDLFGLSIEQLLPIKSYVLDPDSGLPKRDPKTGEEKVVTFFANQKG
EPKKNALAMLENIQAAKQRPLARIITGLSIRHVGPVAAEALAREFRSIDRIRDADETELA
AVDGVGGTIAASLKQWFAVDWHQQIIESWRAAGVRMEEEQTGDEGPRPLEGVTVVVTGTL
QSHTRDGAKEALQNLGAKVTGSVSKKTGFVVVGDNPGSKYDKAMQLKVPVLDDDGFAVLL
EQGPDAARAVAVTPPEEE
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
gtggctggcgaacagcacgcagcggaatccaaggtgcccgcagaggcgcgggagaagcac
gcgcagctcgctgagcagatcgaggagcatcgcttccggtattacgtgaaggacgccccg
gtcatcagtgacgcggagttcgacaagctgctgcgctccctggaggccctggaggacgag
cacgccgagctgcgcacccccgattcgccgacccagaaggtcgccggggcctatgccacg
gagttcaccgaggtcgagcaccgcgaacggatgctctcgctcgacaacgccttcgacgac
gaggagttggcgggctgggccgagcggatcgccggtgagctgggcggcgaccccaagagc
gccaagtaccacttcctgtgcgagctgaaggtcgacggcctcgccgtcaacctcacctac
gagcagggccggctgacccgcgccgccacccgcggcgacggccgtacgggcgaggacatc
acccccaacgtccgtacgatcgccgagatcccgcaccgtctgaagggcgagcggatcccg
gatctggtcgaggtgcgcggggaagtcttcttcccgatggagaagttcctcgcactcaac
gagcggctggtggccgacggcaaaccgccgttcgccaacccccgtaacgccgcggccggt
tcgctgcgccagaaggaccccaaggtcaccgccagccgcccgctgcacatggtcgtgcat
ggtgtcggggcccgcgaaggtctggagatcgagcggctgtcggaggcgtacgacctgctc
aaggagtggggcctgccgaccgccacacacaacaaggtggtcgactccctcgcggccgtg
cgggagttcatcgaccattacggcgacgccgagacccgccgtacggccgtcgagcacgag
atcgacggcgtggtcgtcaagctggacgagatccggctccaggggcggctgggctcgacc
tcgcgggcgccgcgctgggcgatcgcctggaagtacccgccggaggaggtcaacaccaag
ctggtcgacatccgcgtcggcgtcggccgtacgggacgggtcacgccgtatgccgtggtc
gagccggtgaccgtggccgggtccgaggtggagttcgccaccctgcacaaccaggacgtg
gtcaaggccaagggtgtgttcatcggggacaccgtcgtgatccgcaaggccggcgacgtg
atcccggagatcctgggcccggttgccgatctacgggacggcagcgagcgggagttcgtg
atgccggccgagtgccccgagtgcgggacggcgctgcagcccgccaaggaaggcgatatc
gatctgcggtgtcccaacgcccgtgcctgccccgcccagatccgcgagcggctgttctac
ctggccggccgcaagtgtctggacatcgagaacttcggctatgtcgcggcgacggcgctc
agccagccgctggagccgtccgagccgccgctgagggacgagggcgatcttttcggcctc
tccatcgaacagctgctgcccatcaagtcgtatgtcctggaccccgattcgggtctgccc
aagcgtgacccgaagaccggcgaggagaaggtcgtcaccttcttcgccaaccagaagggc
gagccgaagaagaacgccctggccatgctggagaacatccaagcggccaagcagcgcccg
ctggcccggatcatcaccggtctgtcgatccggcatgtgggcccggtggcggccgaggcg
ctggcccgggagttccgctcgatcgaccgcatccgggacgcggacgagacggagctggcc
gccgtcgacggtgtcgggggcacgatcgcggcctcgctgaagcagtggttcgccgtggac
tggcaccagcagatcatcgagagctggcgggccgcgggcgtccgaatggaggaggagcaa
acgggtgatgagggcccacggccgctggaaggcgtcaccgtcgtggtaacgggcacactt
cagtcacacaccagagatggcgcgaaagaggccctccagaacctcggagcgaaggtgacc
ggttctgtttcgaagaagaccggattcgtagttgtgggcgacaaccctggttcgaagtac
gacaaggccatgcagttgaaggtccccgtgttggacgatgatggcttcgcggtgctgctg
gagcagggtcctgacgcagcgcgagcggtagctgtcactccacctgaggaggagtga
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