Spiroplasma turonicum: STURON_00110
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Entry
STURON_00110 CDS
T04034
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
stur
Spiroplasma turonicum
Pathway
stur03030
DNA replication
stur03410
Base excision repair
stur03420
Nucleotide excision repair
stur03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
stur00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
STURON_00110 (ligA)
03410 Base excision repair
STURON_00110 (ligA)
03420 Nucleotide excision repair
STURON_00110 (ligA)
03430 Mismatch repair
STURON_00110 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
stur03032
]
STURON_00110 (ligA)
03400 DNA repair and recombination proteins [BR:
stur03400
]
STURON_00110 (ligA)
Enzymes [BR:
stur01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
STURON_00110 (ligA)
DNA replication proteins [BR:
stur03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
STURON_00110 (ligA)
DNA repair and recombination proteins [BR:
stur03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
STURON_00110 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
STURON_00110 (ligA)
MMR (mismatch excision repair)
DNA ligase
STURON_00110 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
STURON_00110 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
BRCT_2
HHH
5_3_exonuc
TRIP4_3rd
Motif
Other DBs
NCBI-ProteinID:
AKU79356
UniProt:
A0A0K1P4X5
LinkDB
All DBs
Position
122216..124252
Genome browser
AA seq
678 aa
AA seq
DB search
MLLKNIKDFTFNRRYMEDIKKQIEEIKLTLETWEHAYYVLDKPIVDDLVYDNKLKELKTL
EEKYPEYITSDSPTQRVGGQVSEKFEKYNHKYPMLSLDNAFNQDDLYDFDKSIKKQLEKD
NFSYFVEPKIDGLSISLIYEKGKFSKAVTRGNGLQGEDVTFNVKTIRSVPLRINDTSDYF
EVRGEVFLSKKEFERINEERKLSNEDLFANPRNAAAGTIRQLNPTIVASRRLDVFLYYYL
NRDKYTKHSESLSYISSLGFKVNDLGKHCKSIEDVIEHINYIENQRYNLQYEIDGAVVKV
DEFKFYDKIGYTSKFPKWATAYKYPAEIKVTKLLNIFASVGRTGKITYNAILSPVSLAGT
TVQAATLHNAEYIFNKKIKVGSNVKVKKAGDIIPEVLEVIEDELYNTLETYKKIEYCPAC
DSKLEIFNDEVDQYCINFNCERKIIKSLEHFVSRGAMNIDGMSIKIIEKLYANKIIKNVI
DIYNFKKHKSKILELDNMGEKSFNNLLEAIEKSKTNDADKLLFGLGIRYVGSKTAKLLLE
RFKDVKNLLNATKEEIESIYEVGPKVAQSIIDWSSIQENVDLINELQIVGVNINFSKNQS
NDNVNISKKSFVITGTLSKPRPYFVDLIESFGGKVISAISKKTDYLLAGEEAGSKLEKAK
SLQVNIISEEDFFKMLEG
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
ttgttattaaaaaatataaaagattttacattcaataggagatatatggaagatattaaa
aaacaaatagaagaaataaaattaactttagaaacttgagagcatgcatattatgttttg
gacaagcctattgttgatgatttagtttatgataataaattaaaagagttaaaaacatta
gaagaaaaatatccagaatatattacatctgattcaccaactcaaagagtaggcggtcaa
gtttctgaaaagtttgaaaaatataatcataaatatccaatgctaagtttagataatgcc
tttaatcaagatgacttgtatgacttcgataaatctataaaaaaacaattagaaaaagat
aatttttcatattttgtagagcctaagattgatggattatcaatttctttgatatatgaa
aaaggtaaattttctaaagctgttactaggggtaatggtttacaaggtgaagatgtaaca
tttaatgttaaaactataagaagtgtcccattaagaataaatgatacatctgattacttc
gaagtcagaggagaagttttcttatcaaaaaaagaatttgagagaattaacgaagaaaga
aaactaagtaatgaggatttatttgcaaacccaagaaacgcagctgctggaactataaga
caactgaacccaacaattgtggcatcaagaagattagatgtttttttatattattattta
aatagagataaatatacaaaacatagtgaatcattaagctacatttcttcattaggtttt
aaagttaatgatttaggtaaacactgtaaatcaattgaagatgtaattgaacatattaat
tatattgaaaaccaaagatataatttacaatatgaaattgatggtgctgtagttaaggtg
gatgaatttaaattttatgataaaattggttatacatcaaagtttcctaaatgagccaca
gcatataaataccccgcagaaattaaagttacaaaacttctaaacatttttgcatcagta
ggtagaactggtaaaatcacatataatgcaatactaagccctgtatccttggcagggaca
actgtacaagcagctacactacataatgctgaatatatatttaataagaaaataaaagtt
ggttcaaatgtaaaggtaaaaaaagctggggatataatacctgaagttctagaagtaatt
gaagatgaactatacaatacattagaaacatacaaaaaaatagagtattgcccagcatgt
gattctaagttagaaatatttaatgatgaagtagatcaatactgtataaattttaattgt
gaacgaaaaattataaaaagtctagagcattttgtatcaagaggtgctatgaatatagat
ggaatgagcattaaaataattgaaaagctttatgcaaataaaattataaaaaacgttatt
gatatttataattttaaaaaacataagtcaaaaatattagaattggataatatgggtgag
aaatcttttaataatttattagaagcaattgaaaaaagtaaaactaatgacgccgataaa
ttattatttggtttagggattagatatgtaggaagtaagacagccaaattactattagag
agatttaaagatgtaaaaaatttattaaatgctactaaagaagaaatagaatctatttat
gaagtgggaccaaaagttgctcaatcaataattgattgaagtagtattcaagaaaatgtt
gatctaataaatgaattacaaatagttggtgtgaatataaatttcagtaaaaatcaaagt
aatgataatgttaacatctcaaaaaaatcttttgttattactggaacattaagtaaacca
agaccttattttgttgatttaattgaatcatttggtggtaaagtaataagtgcaataagt
aaaaaaactgattatcttttagctggtgaagaagctggtagtaaattagagaaagcaaaa
tcattacaagttaatataatttcagaggaagatttttttaaaatgctagaggggtaa
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