Salmonella enterica subsp. enterica serovar Typhi CT18: STY2663
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Entry
STY2663 CDS
T00064
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sty
Salmonella enterica subsp. enterica serovar Typhi CT18
Pathway
sty03030
DNA replication
sty03410
Base excision repair
sty03420
Nucleotide excision repair
sty03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sty00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
STY2663
03410 Base excision repair
STY2663
03420 Nucleotide excision repair
STY2663
03430 Mismatch repair
STY2663
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sty03032
]
STY2663
03400 DNA repair and recombination proteins [BR:
sty03400
]
STY2663
Enzymes [BR:
sty01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
STY2663
DNA replication proteins [BR:
sty03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
STY2663
DNA repair and recombination proteins [BR:
sty03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
STY2663
NER (nucleotide excision repair)
GGR (global genome repair) factors
STY2663
MMR (mismatch excision repair)
DNA ligase
STY2663
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
STY2663
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
Prok-E2_C
Ned1_M
DZR_2
Motif
Other DBs
NCBI-ProteinID:
CAD07659
UniProt:
Q8Z4W4
A0A716MDD1
LinkDB
All DBs
Position
complement(2499609..2501624)
Genome browser
AA seq
671 aa
AA seq
DB search
MEPIEQQLTELRTTLRHHEYLYHVMDAPEILDAEYDRLMRELRELEAQRPDLITPDSPTQ
RVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTENVIWCCELKLDGLA
VSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQTG
FEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHL
GRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVNSLALQEQL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHN
ADEIERLGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVFPTHCPVCGSDVERVEG
EAVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEREYVHTPADLFRLTAG
KLTGLDRMGPKSAQNVVNALEKAKATTFARFLYALGIREVGEATAAGLAAYFGTLEALQA
ATIDELQKVPDVGIVVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVVINAQEIDSPFAG
KTVVLTGSLSQMSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVI
DEAEMIRLLGA
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggaaccaatcgaacaacaactgacagaactgcgaaccacgcttcgccatcatgaatat
ctgtatcatgtgatggatgcgcccgagattctcgacgccgaatatgaccgcctgatgcgg
gaactgcgagagctggaggcgcaacgtccggaccttatcacgccggattcgcccacgcag
cgcgttggcgcggcgccgctgacggcattcaaccagattcgccatgaagtaccgatgctg
tcgctcgataacgtatttgatgaagaaagcttcctggcgtttaacaagcgagtgcaggat
cgtctaaaaagcacggaaaatgtcatctggtgctgcgagctaaaactggatggcctggcg
gtcagcattctgtatgaaaacggcgtgctggtgagcgctgcgacgcgtggcgacggcacc
accggtgaagatatcacttcaaacgtgcgcacgattcgcgccattccgttaaagctgcac
ggcgataacattccggcgcgtcttgaagttcgcggagaggtatttttaccgcagaccggg
ttcgaaaagatcaatgaagacgcgcgccgtactggcggcaaagtgtttgctaatccgcgt
aacgcggcggcgggctcgttgcgtcagctcgatccgcgtattacggcgaagcgaccgcta
acatttttctgctacggcgtcggtattctggaaggcggagagttgccggatacgcatctg
ggacggttgctgcaatttaaagcgtgggggttaccggtcagcgatcgcgtgacgctgtgc
gattctccccaggcagtactggatttttatcacaacgtcgaaaaagatcgccccacgctc
ggttttgatatcgacggcgtggtgattaaggtcaactcgctggctttgcaggaacagctg
ggctttgtggcccgcgcgccgcgctgggcggtggcgtttaaatttcctgctcaggagcag
atgacttttgtgcgcgacgttgagtttcaggtcgggcgcaccggggcgattacgccggtg
gcgcgtctagaaccggttcaggtggctggtgtgctggtcagcaatgccacgttgcataat
gccgatgaaattgagcggcttggcttgcgcattggcgataaggtggttatccgtcgggca
ggcgatgtgatccctcaggtggtcaacgtggttctgtccgaacgccctgaagagacgcgt
ccgattgtgtttccaacgcactgtccggtgtgcggatcggacgtagagcgcgtcgaaggc
gaagccgttacccgttgtaccggcgggctgatttgcggcgcgcagcgtaaagagtcgctg
aaacattttgtgtcgcgccgggcgatggatgtagacgggatgggcgataagatcatcgac
caactggtggaaagggagtatgtccatacgccagcggatctgttccgtctgacggcgggt
aaactgaccggcctggaccgaatggggccaaagtccgcgcaaaatgttgttaacgcgctg
gaaaaagccaaagcgacgacttttgcgcgttttctctatgcgctgggcatccgtgaagtg
ggtgaagcgacggcggcggggctggcggcgtacttcggcacgctggaggcgctgcaggct
gccaccattgacgagttgcagaaagtacccgacgtggggattgtggtcgctacgcacgtc
tttaacttttttgccgaagagagcaatcgtgacgtgattgggcagctactggcggaaggg
gttcactggcccgcgccggtagtcattaatgcgcaagagatcgatagcccgtttgccggt
aaaaccgtggtactaaccggtagcctgagccagatgtcccgcgatgacgctaaagcgcgt
ttagtggctctgggcgcgaaagtggcaggcagcgtatcgaagaaaaccgatctggtgatt
gccggtgaagcggcgggctccaaactggccaaagcgcaggaactgggtattaccgtgatt
gatgaagcggaaatgatccgcttactgggtgcctga
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integrated database retrieval system
