Streptomyces sp. YIM 121038: C9F11_22840
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Entry
C9F11_22840 CDS
T11066
Symbol
pdg
Name
(GenBank) Ultraviolet N-glycosylase/AP lyase
KO
K10773
endonuclease III [EC:3.2.2.-
4.2.99.18
]
Organism
styi Streptomyces sp. YIM 121038
Pathway
styi03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
styi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
C9F11_22840 (pdg)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
styi03400
]
C9F11_22840 (pdg)
Enzymes [BR:
styi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
C9F11_22840 (pdg)
DNA repair and recombination proteins [BR:
styi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
C9F11_22840 (pdg)
Prokaryotic type
C9F11_22840 (pdg)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HhH-GPD
HHH
EndIII_4Fe-2S
Extensin_1
HC2
RecR_HhH
Motif
Other DBs
NCBI-ProteinID:
QCX78190
LinkDB
All DBs
Position
5365985..5367046
Genome browser
AA seq
353 aa
AA seq
DB search
MANQGASRAARPTAEPTDGAASAGAAAKKVPAAKAPAKKASTKKAPAAEKAPAKKASVAE
APAKKAPAKKAPAKKAPAGKATAGGAKAAPQGVKAPAAPKTHTALVRQARRINRELADVY
PYAHPELDFENPFQLLVATVLSAQTTDLRVNQTTPALFAKYPTPEDLAAANPEEVEEVIR
PTGFFRAKTRSIMGLSAALRDDFGGEVPGRLEDLVKLPGVGRKTAFVVLGNAFGVPGITV
DTHFGRLVRRWKWTAETDPEKVEAVVAGLFPKSDWTMLSHRVIFHGRRICHARKPACGAC
PIAPLCPSYGEGETDPEKAEKLLKYEKGGLPGQRLKPPPDYPGRAAPPLGATG
NT seq
1062 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatcaaggcgcttcacgggccgctcggcccactgcggagccgacggacggggcg
gcgtcggccggggcggcggccaagaaggtgcccgccgcgaaggccccggcgaagaaggct
tcgaccaagaaggctccggcggcggagaaggctccggccaagaaggcatccgtggccgag
gctccggcgaagaaggctccggcgaagaaagccccggcgaagaaggctcccgccgggaag
gcgaccgccgggggcgcgaaggccgccccccagggcgtgaaggcccccgccgcgcccaag
acgcacacggccctcgtccgccaggcccgccgcatcaaccgcgagctcgccgacgtgtat
ccgtacgcgcacccggagctcgatttcgaaaacccgttccaattgctcgtggcgaccgtc
ctctccgcgcagacgacggacctgcgggtcaatcagacgacaccggccctcttcgccaag
tacccgaccccggaggacctcgccgcggccaatccggaggaggtcgaggaggtgatccgg
ccgaccgggttcttccgcgccaagacccggtcgatcatgggcctctccgccgccctgcgg
gacgacttcggcggcgaggtgcccggccgcctcgaagacctggtcaagctgcccggcgtg
ggccgcaagaccgccttcgtcgtcctgggcaacgccttcggcgtccccggcatcaccgtg
gacacccacttcggccgtctggtgcgccgctggaagtggacggcggagaccgacccggag
aaggtcgaggccgtcgtcgccgggctcttccccaagagcgactggacgatgctgtcgcac
cgcgtgatcttccacggccgccgcatctgccacgcccgcaagcccgcgtgcggcgcctgt
ccgatcgcccccctctgcccgtcgtacggggagggcgagacggacccggagaaggccgag
aagctcctgaagtacgagaagggcggcctgccggggcagcgcctcaagcccccgccggac
tatccgggcagggccgcgccgccgctcggcgccacggggtga
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