Sulfurimonas autotrophica: Saut_0884
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Entry
Saut_0884 CDS
T01316
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sua
Sulfurimonas autotrophica
Pathway
sua03030
DNA replication
sua03410
Base excision repair
sua03420
Nucleotide excision repair
sua03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sua00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Saut_0884
03410 Base excision repair
Saut_0884
03420 Nucleotide excision repair
Saut_0884
03430 Mismatch repair
Saut_0884
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sua03032
]
Saut_0884
03400 DNA repair and recombination proteins [BR:
sua03400
]
Saut_0884
Enzymes [BR:
sua01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Saut_0884
DNA replication proteins [BR:
sua03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Saut_0884
DNA repair and recombination proteins [BR:
sua03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Saut_0884
NER (nucleotide excision repair)
GGR (global genome repair) factors
Saut_0884
MMR (mismatch excision repair)
DNA ligase
Saut_0884
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Saut_0884
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_5
HHH_2
PTCB-BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
ADN08933
UniProt:
E0URC3
LinkDB
All DBs
Position
860124..862076
Genome browser
AA seq
650 aa
AA seq
DB search
MNKQEYKQAVEKLNLWAYHYYVLDDPIMTDEVYDKLYKEVEQYEEAHPEDILKNSPTQRV
GDVVSEGFAKEPHLSRMWSLEDIFDADGLKKWLEKVYRLDSHVTFYCEPKYDGASLNLVY
ENGELQKGITRGDGTVGERITQNVKTIHTVPLSIEHKELIEIRGEVVIFKDEFDKINKER
LKKGEPPFANPRNAAAGSLRQLDPSITAARNLVFLPYGVGVNTLPHKLLNDKMSYIYELG
FRKPPLRAITKGYDEIEAIYERMKEERESYSMMLDGMVVKVNEIAAQIDMGYTVKVPRWA
VAYKFPAVEKITRLKNIILQVGRTGVVTPVAVVEPTEIEGAVVERATLHNFDEIERMDIR
IGDQVIILRSGDVIPKIVKVLTQERDGSEVKIERPTHCPVCGSELLQEEVLIKCQNLKCE
ARVVNSIIYFASKQCLNIDGLGNKIVEQLFNAGLVRSVLDLFSLTQEKLLELEGFKEKKA
QNLLRSIENAKGCELWRFINALGIEHIGEVASKRIAEAFGLEYIHQNKEQLLTIEGIGDE
MAESYLEFMRVNEETVVKLQEILRPVEPKKREEAQDNPFKGKRIVLTGTMSEPRPVIKEK
LEDLGAKVSGSVSKKTDYVIYGEDAGSKYDKAISLGVKTLTEDELKELLQ
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atgaataaacaagagtataaacaagcagtagaaaaattgaatctttgggcatatcactat
tatgttttggatgatcctataatgacggatgaggtttatgataagctttataaagaagtt
gagcagtatgaagaggcacatcctgaagatatattaaaaaattctccgacacaaagagtg
ggtgatgttgtcagtgagggttttgcaaaagagccgcatctttcgcgtatgtggtcttta
gaagacatttttgatgctgatgggctgaaaaaatggctggagaaagtatataggcttgat
tctcatgtcacattttattgtgaaccaaagtatgatggtgcttcgctcaatcttgtatat
gaaaatggtgaattgcagaaaggaattactcgaggagatggaacagtcggtgagcgtatt
acacaaaatgtcaaaaccatacacactgttcctttaagcattgagcataaagagcttata
gagattcgcggtgaggttgtgatttttaaagatgaatttgacaaaataaacaaagaacga
ttaaaaaaaggagaaccgccttttgcaaatccgcgtaatgcggctgcggggagtcttcgt
cagcttgacccgagtattaccgctgcccgcaatcttgtttttcttccttacggtgtaggt
gtcaatacgctgcctcataaactcttgaatgataaaatgtcttatatttatgaacttgga
tttcgtaaaccgccgcttcgtgccattacaaaagggtatgatgaaatagaagccatttat
gagaggatgaaagaagaacgtgagagttactctatgatgcttgacggtatggtggtaaaa
gtgaatgaaatagccgcgcaaatagatatgggctatactgtaaaggttccgcgctgggca
gtggcttacaagtttcctgcagttgaaaagattactcgcctcaaaaatatcatattacag
gtggggcgtacaggggtagtgacacctgttgccgtggttgaaccgacagagatagaaggt
gccgtggtggagagggcaacgctgcataacttcgatgagatagagcgtatggatatccgc
ataggtgatcaagtgataattttgcgaagcggggatgtcattcctaaaatcgtaaaagtg
cttacgcaggagagagacggcagtgaagtgaaaattgagcgtcctacgcattgccctgtt
tgcgggagtgaactgctgcaagaagaggtgcttataaaatgtcaaaaccttaaatgtgaa
gcgcgtgttgtaaattccattatctattttgcttcaaaacagtgtctaaatattgatgga
ctgggcaataaaatagttgaacagctttttaatgcaggacttgtaagaagtgtacttgat
ttattttcactaactcaagaaaaactgcttgaacttgaaggctttaaagagaaaaaagca
caaaatctacttcgttccatagagaatgcaaaagggtgtgaactttggcgttttatcaat
gcactggggattgagcatatcggagaagtggcatcaaaaaggatagctgaggcttttggt
ctggagtatattcatcagaataaagaacagcttcttactatagaaggtataggcgatgag
atggcggagtcttatttagaatttatgcgggtcaacgaagagacagtagtcaaacttcaa
gagatactccgtcccgtagagccaaaaaaacgagaagaagcacaagataatccttttaaa
ggcaaaagaattgtactcacaggaacaatgagcgaaccgcgaccggttataaaagaaaaa
ctcgaagacttaggcgcaaaagtaagcggcagtgtgagtaaaaaaacagactatgtcatt
tacggtgaagatgccggaagcaagtatgacaaagccattagtttaggtgtgaaaacactt
acagaagatgaacttaaagagttattacagtga
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