Streptococcus uberis: SUB0658
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Entry
SUB0658 CDS
T00849
Symbol
lig
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sub
Streptococcus uberis
Pathway
sub03030
DNA replication
sub03410
Base excision repair
sub03420
Nucleotide excision repair
sub03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sub00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SUB0658 (lig)
03410 Base excision repair
SUB0658 (lig)
03420 Nucleotide excision repair
SUB0658 (lig)
03430 Mismatch repair
SUB0658 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sub03032
]
SUB0658 (lig)
03400 DNA repair and recombination proteins [BR:
sub03400
]
SUB0658 (lig)
Enzymes [BR:
sub01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SUB0658 (lig)
DNA replication proteins [BR:
sub03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SUB0658 (lig)
DNA repair and recombination proteins [BR:
sub03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SUB0658 (lig)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SUB0658 (lig)
MMR (mismatch excision repair)
DNA ligase
SUB0658 (lig)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SUB0658 (lig)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
Nlig-Ia
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
5_3_exonuc
RNA_ligase
RTT107_BRCT_5
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
CAR41520
UniProt:
B9DRS2
LinkDB
All DBs
Position
624923..626881
Genome browser
AA seq
652 aa
AA seq
DB search
MEKRIRELTSLLNQYRQEYYTNDNPSVSDQEYDKLYHELIDLEKEYPEYIQKDSPSQAVG
GLILSGFEKYQHPFPLYSLQDAFSKEELEAFDRRVKSEFPKAEYIAELKIDGLSISLSYE
SGRLVTGATRGDGSVGENITENIKKIKDIPHQLKDDITITVRGEAYMSRSSFQKINLERQ
ENGETEFANPRNAAAGTLRQLDTSIVARRELASFLYQEASPSQAQNQEDVLENLEALGFS
VNKKRLISSSMEDIWSFITQVEDERDNLSYDIDGIVIKVNNLAMQEELGFTIKAPRWAIA
YKFPAEEKEAEILSVDWTIGRTGVVTPTANLTPIQLAGTTVSRATLHNVDYIAEKDIRIG
DTVIVYKAGDIIPAVLRVVDTKRDQQLPMPIPKVCPSCQSDLVHLEAEVALRCINPLCPS
LIQRSLEHFASRNAMNIAGLGPAIVEKLFSAQLIHDVADIYQLSLDSLLTLEGIKEKSAQ
KLLDAIQSSKSNSADKLLFGLGIRHVGAKASRLLLETFGSVENLMKADDQSIAQIDGLGH
VIANSIKNYFAKEEAKQLIFELKDKGVNLDYLGKKVDTSAQLFGLTVVLTGKLEEMTRQE
AKEKLENMGAKVTGSVSKKTDLVIAGSDAGSKLDKARSLGIDVKDENWLLQL
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaaagaattagagaattgacgtcgttactgaatcaatatcgtcaagaatattat
accaatgataatccaagtgttagtgatcaggagtatgataaactctatcacgaactcatt
gacttagaaaaagaatacccagaatatattcaaaaagatagtccatcacaagcagtggga
gggcttattttatctggatttgaaaaataccaacacccattccctctatacagtttgcaa
gatgctttttcaaaagaagaattggaagcatttgatcgtcgcgtaaaatcagaatttccc
aaagcagaatacattgctgaattaaaaatcgatggcttatctatttctttgagctatgaa
tcaggccgattggtaacgggagcaacgcgtggtgatggcagtgttggggaaaatattact
gaaaacatcaaaaagataaaagatattccccatcaattgaaggatgacattacaattact
gttagaggcgaagcctacatgtcacgaagttcttttcaaaaaattaatttggaacgacaa
gaaaatggtgaaacggagtttgctaatccaaggaatgctgcagctggtactttaagacag
ttagatacttcaattgttgccagacgagaattggcaagctttttgtaccaagaggcgagt
cctagtcaagctcaaaatcaagaagatgtattagaaaacttggaagctttgggcttctca
gtaaataaaaagcgtcttatcagttcctctatggaagacatatggtcatttattactcaa
gtagaggacgaacgagataacctaagctatgatatcgatggtatcgtgattaaggtcaat
aatttagcaatgcaagaagaattaggcttcaccattaaagctcctcgatgggccatagct
tataaatttccagcagaagaaaaagaagctgaaatcctttcagtggattggacaatcggt
agaacaggggtggttacgccaacagccaatttaacaccaattcaacttgctgggactact
gttagccgagcgactcttcataatgtcgattatattgcagaaaaagatattcggatcggt
gatactgtcattgtttataaagctggagatattattccagcggttttacgggtagtagac
acaaaacgggaccaacaattaccgatgcctattcctaaagtgtgcccctcttgtcagagt
gatttagttcaccttgaagctgaagtggctttacgctgtatcaatcctctttgtccaagt
cttattcaaaggagtttagaacattttgccagtcgaaatgcaatgaatattgccggactt
ggccctgctattgttgaaaaactcttttcggcccaattaattcacgatgtggcggatatt
taccaattgtcattagacagcttattgactttggaagggattaaagaaaagtctgctcaa
aaattgttggatgcgattcaatcttccaagtctaattcagcagataaattattatttgga
ttgggtataagacatgttggtgcaaaagctagtcgtttgttattagagacttttggaagt
gttgaaaatctaatgaaagctgatgatcaatccatagctcaaatcgatggtttgggtcat
gttattgcaaattctattaaaaattattttgcaaaagaggaagctaaacaattaattttc
gaattaaaagataagggtgttaatcttgattatcttggaaaaaaagttgacacctctgct
caattgtttggtcttactgtggtactcacaggcaaattagaagaaatgacgcgtcaagag
gcgaaagaaaagttagaaaatatgggcgccaaagttactggcagcgtttcaaagaaaacg
gatttagttattgccggaagtgatgctggttcgaaattagataaagctcgtagtctaggc
attgacgtaaaagatgaaaattggttactccaattataa
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