Subtercola endophyticus: LQ955_09610
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Entry
LQ955_09610 CDS
T08409
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
suba
Subtercola endophyticus
Pathway
suba03030
DNA replication
suba03410
Base excision repair
suba03420
Nucleotide excision repair
suba03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
suba00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LQ955_09610 (ligA)
03410 Base excision repair
LQ955_09610 (ligA)
03420 Nucleotide excision repair
LQ955_09610 (ligA)
03430 Mismatch repair
LQ955_09610 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
suba03032
]
LQ955_09610 (ligA)
03400 DNA repair and recombination proteins [BR:
suba03400
]
LQ955_09610 (ligA)
Enzymes [BR:
suba01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LQ955_09610 (ligA)
DNA replication proteins [BR:
suba03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LQ955_09610 (ligA)
DNA repair and recombination proteins [BR:
suba03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LQ955_09610 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LQ955_09610 (ligA)
MMR (mismatch excision repair)
DNA ligase
LQ955_09610 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LQ955_09610 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
DNA_ligase_ZBD
HHH_5
BRCT
HHH
Nlig-Ia
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
UFS60961
LinkDB
All DBs
Position
complement(2048554..2051016)
Genome browser
AA seq
820 aa
AA seq
DB search
MMAKSSATTKSERESGAAQVAATSASTVASTAAADELTLEQAADEASALTTRIQELRDAY
YDKDASLVSDEDYDRMLRRLGELERLFPELQSQDSPTQTVGGRAETTLFSPVQHAERMLS
LDNVFSLDEFAEWAAKVERDSGRPVHYLCELKIDGLAMNLRYVNGRLVSAATRGDGVVGE
DVTENVAYIPGIPTKLEGTGHPPLMEVRGEIFFPVATFDELNAAQLAAGDRLFANARNAA
SGSLRQKAENKTAAGLDLMHRRLTGLRMLVHGIGAWPNPPVDTQSGIYDLLKSWGLPTST
HYQVKPDIAGASEFIEYFGEHRYSVEHELDGIVIKVDELALHEELGATSRAPRWAIAYKY
PPEQVQTKLLDIVVSVGRTGRATPFAVMQKVRVAGSEVRQATLHNQDVVKAKGVLIGDTV
ILRKAGDVIPEVLGPVVELRDGTEREFVMPEFCPECGTRLAPAKENDIDLRCPNARSCPA
QVRGRVEHVGSRGALDIEVLGEVAAAALTQPDQPARAPLDTEAGLFDLTLEQIFPITTIV
RDYETGLEKLDDNGEPKREAPFRRRRQKKDGLFVPPGASAPATSDTAEGSGEATLTAESV
TASTARTASTTFAGDEFYVPSASAIKLIENIEKAKTSLLWRILVALSIRHVGPVAARSLA
DYFGSLDAIRAATREELAAVDGVGGIIADALIDWFSVDWHVEIIDRWAAAGVQFSTPGHP
GPGANVGAGGTLDGLTVVATGSLEGFTREGAIEAIIAAGGKAASSVSKKTDFVAAGPGAG
SKLPKAEALGLRIINAEQFALLLKEGPAALAEPEAEEDPL
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
atgatggcgaaatcctcagcgacgacgaagtccgagcgtgaatcgggtgccgcgcaagtg
gcggccacttcggcgagcacggtggcgagcacggctgcggccgacgagctgacgctcgag
caggcggccgacgaagcctcggcgctcactacgcgcatccaagagcttcgcgacgcgtat
tacgacaaagacgcctcgctcgtctccgacgaagactacgaccgcatgctgcgcaggctc
ggcgagctcgagcggctctttcccgagctgcagagccaagacagccccacgcagaccgtc
ggcggtcgcgctgagaccacgctgttctccccggtgcagcatgccgaacgcatgctcagc
ctcgacaacgtcttctcgctcgacgagttcgccgagtgggcggccaaggtcgaacgcgat
tccggccggccagtgcactacctctgcgagctgaagatcgacggcctggcaatgaacctg
cgctacgtcaacggcaggctcgtttcggcggcgactcggggtgacggcgtcgtcggcgaa
gacgtcaccgagaacgtcgcgtacattccgggaatcccgacgaaactcgaaggcaccggg
catccgcctctcatggaggtgcgcggcgagatcttcttcccggtcgccacgttcgacgaa
ctgaacgccgcgcagctcgctgcgggcgaccgcctgttcgccaacgcccgcaacgcggcg
agcggatcgctgcggcagaaggctgagaacaagaccgctgccggcctcgacctcatgcat
cggcgcctcacgggcctgcggatgctcgtgcacggcatcggcgcctggccgaacccgccc
gtcgacacccaatcgggcatctacgacttgctcaagtcgtggggactgcccaccagcacg
cactaccaggtgaagcccgacatcgccggcgcctcggagttcatcgagtacttcggtgaa
caccgctacagcgtcgagcacgagctcgacggcatcgtgatcaaggtcgacgagctcgcg
ctgcacgaagagctcggcgccactagcagggcgccgcgctgggccatcgcctacaagtac
ccgcccgagcaggtgcagacgaagctgctcgacatcgtggtgagtgtggggcgcaccggt
cgagcgacgccgttcgccgtgatgcagaaggttcgcgtcgctggctcagaggttcggcag
gccaccctgcacaaccaagacgtcgtgaaggccaagggtgtgctcatcggcgacacggtc
atcctgcgtaaggccggcgacgtgattcccgaagtgctcgggccggtcgtcgagctgcga
gacggaaccgaacgcgagttcgtgatgcccgaattctgccccgagtgcggcacccgtctc
gctcccgcgaaagagaacgacatcgacctgcgctgcccgaacgcgcgaagctgccccgct
caggtgcgcggcagggtcgagcatgtcggctcgcgcggtgcgctcgacatcgaggtgctc
ggcgaggtcgcggcggccgccctcactcagcccgatcagcccgcccgggcgccgctcgac
accgaagccgggttgttcgacctcacgctcgagcagatcttccccatcacgaccattgtg
cgcgactacgagaccggcctcgagaaactcgacgacaacggcgagcccaaacgtgaggcg
ccgttccgtcgccgtcggcagaagaaagacgggctcttcgtgcctcccggcgctagcgca
cctgccacttcggacaccgccgaagggtctggcgaggctactctcactgctgaatctgtc
accgcctctaccgctcgtactgcctcgaccaccttcgccggcgacgagttctacgtgcct
tctgcgagtgcgatcaagctcatcgagaacattgagaaggcgaagacgagtctgctgtgg
cgcatcctcgtcgcgctgagcatccggcacgtcgggcccgtcgcggcgcgctcgctcgcc
gactacttcggttcgctcgacgccatccgtgccgcgacccgtgaagagctcgcggcggtc
gacggggtcggcggcatcatcgccgatgcgctcatcgactggttctcggtcgactggcac
gtcgagatcatcgaccgctgggcggcggctggcgtacagttcagcacccccgggcatccg
ggccccggcgcaaacgtcggcgccggcggaaccctcgacggcctcaccgtcgtcgccacc
ggctcgctcgagggcttcacccgtgaaggcgccatcgaggcgatcatcgcggccggcggc
aaggcggcctcgtcggtctcgaagaagaccgacttcgtggcggccggccctggtgccggc
tcgaagctccccaaagccgaggccctgggcctccgcatcatcaacgcggagcagttcgcc
ctgttgcttaaggaaggccccgcggctctggccgagcctgaagccgaagaagatccactt
tag
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integrated database retrieval system
