Sulfitobacter sp. CB2047: IV89_001833
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Entry
IV89_001833 CDS
T10375
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sulb Sulfitobacter sp. CB2047
Pathway
sulb03030
DNA replication
sulb03410
Base excision repair
sulb03420
Nucleotide excision repair
sulb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sulb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IV89_001833 (ligA)
03410 Base excision repair
IV89_001833 (ligA)
03420 Nucleotide excision repair
IV89_001833 (ligA)
03430 Mismatch repair
IV89_001833 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sulb03032
]
IV89_001833 (ligA)
03400 DNA repair and recombination proteins [BR:
sulb03400
]
IV89_001833 (ligA)
Enzymes [BR:
sulb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
IV89_001833 (ligA)
DNA replication proteins [BR:
sulb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
IV89_001833 (ligA)
DNA repair and recombination proteins [BR:
sulb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
IV89_001833 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
IV89_001833 (ligA)
MMR (mismatch excision repair)
DNA ligase
IV89_001833 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
IV89_001833 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
NPCBM
Motif
Other DBs
NCBI-ProteinID:
ULO18853
LinkDB
All DBs
Position
complement(1853986..1856106)
Genome browser
AA seq
706 aa
AA seq
DB search
MTDKTALQELSEEEAKAELARLADLLGRANAAYHTQDAPDLSDAEYDRLKRRNQAIEERF
PGLKRADSPSDKVGAAPAEGFGKVRHDVAMLSLGNAFEDEDVVDFDARIRKYLGLPSGTP
LAFTAEPKIDGLSLSLRYENGDLVQAATRGDGAVGENVTANARTIDTIPTRIEGAPALLE
VRGEVYMRHDDFDALNARQTANGGKTFANPRNAAAGSLRQLDPEITRARPLAFFAYAWGA
LSAPLAETQFQAIERLKAFGFDTNPLTTLCDGPQEMIAHYRKIEEQRATLGYDIDGVVYK
VNDLALQDRLGFRSSTPRWAIAHKFPAELAWTRLEDITIQVGRTGALSPVARLKPVTVGG
VVVSNATLHNEDYIKGLDSKGARIRDGKDIRVGDWVQVYRAGDVIPKIADVDLGKRPEDA
RAYVYPTTCPECGSDAIREEGDAVRRCTGGLICPAQAVEKLKHFVSRAAFDIDGLGAKQV
EQFYADGWIAEPADIFTLKARYGSGMQQLKNREGWGEKSADKLFQAIEDKRKIPLSRLIF
ALGIRHVGEAASNLIAQHYGSWTAFEAAMGHAKSGVGPAWDDLIGVDGIGQVMAQSLVST
FAQEAERASIDRLVTELSVQDVARPDTEGSPVAGKTVVFTGTLEKMTRAEAKARAERLGA
KVSGSVSAKTDILVAGPGAGSKAKKAADLGIQTLDEDGWLALIDGA
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
gtgactgataaaaccgcacttcaggagctttccgaagaggaggccaaagccgaattggcg
cggttggctgacctgttggggcgggcgaatgcggcctatcacacgcaggacgcgcccgac
ctgtcagacgcggaatatgatcgcctgaaacgtcgcaatcaggcgatcgaggaacggttt
cccggcctcaaacgcgctgatagccccagcgacaaggtcggtgccgccccggcggaaggg
ttcggcaaggtccggcatgacgtggcgatgctgtccttgggcaatgccttcgaggatgag
gatgttgtcgatttcgatgcgcgcatccgcaaatatctggggctgccaagcggcacgccg
ctggccttcaccgcagagcccaagattgacgggctgtcgctgtcgctgcgctatgaaaac
ggggatctggtgcaggccgcgacccgtggggatggtgccgtcggggaaaacgtcaccgcc
aatgcgcgcacgattgataccattccgacgcggatcgagggcgcaccggcgctgcttgag
gtgcgaggcgaagtctatatgcgccacgacgattttgatgcgctgaacgcccgacagacg
gccaatggcggcaagacctttgctaatccgcgcaacgccgccgccggatccttgcgccag
ctggatcccgagattacccgcgcacggccgctggcgtttttcgcctatgcctggggggcc
ttgtccgcgcctctggccgaaacgcagtttcaagcgatagagcggcttaaggcattcggg
tttgacaccaacccgttgacgacgctctgcgatggtccgcaagagatgatcgcgcattac
cgtaagatcgaagagcaacgcgcgacgcttggctatgatatcgacggcgtcgtctacaag
gtgaacgatctggcgttgcaagaccggcttggctttcgctcatccaccccccgttgggca
attgcgcataaattccctgcagaactagcctggacccggctggaggatatcaccattcag
gtcggccgcaccggcgcgctgtcgccggtggcgcggttgaagccggtgaccgtggggggc
gtcgttgtctcgaatgcgacgctccataacgaggattatatcaaagggctcgacagtaag
ggggcccgtatccgcgacggcaaggatatccgcgtcggcgactgggtgcaggtctaccgt
gcgggggacgtgatccccaagatcgcggatgtggaccttggcaagcgacccgaggacgct
agagcctatgtctatccaacgacatgcccggaatgtggcagcgacgccatccgcgaggaa
ggtgacgcggtgcgtcgctgtacggggggtttgatctgtcctgcccaagcggttgaaaag
ctgaaacatttcgtatcacgcgcggcttttgatattgacggtctgggcgcgaaacaggtc
gagcaattctatgccgatggctggatcgcggaaccggcggatatcttcacgctaaaggcg
cgatatggcagcggcatgcagcagctcaagaaccgcgagggctggggcgagaaatctgcc
gataaactgtttcaggccattgaggataaacgcaaaattcccctgtcgcggctgattttt
gcgcttggcatccgccatgttggcgaagcggcgtcgaacctgatcgcgcagcattacggc
agctggaccgcgttcgaggctgcaatgggccatgcaaaatccggggttggccccgcctgg
gacgatctgatcggtgtggacggcatcggtcaggtcatggcgcaaagcttggtaagcacc
tttgcccaagaggccgaacgtgcctcgatcgaccggctggtaacggaactgtcggtgcag
gatgtggcgcgccctgataccgaagggtcccccgtggcgggaaaaaccgtggtcttcacc
ggtacgcttgaaaaaatgacccgcgccgaggcgaaggcgcgcgccgaacgtttgggtgcc
aaggtctctggctcggtcagtgcgaaaaccgatattctggtcgcggggccgggggctggc
tccaaggccaagaaagctgcggatctgggcattcagacattggacgaggacggctggctt
gcgctgatcgacggcgcatga
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