Sulfurimonas sp. CVO: CVO_03165
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Entry
CVO_03165 CDS
T06373
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sulc
Sulfurimonas sp. CVO
Pathway
sulc03030
DNA replication
sulc03410
Base excision repair
sulc03420
Nucleotide excision repair
sulc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sulc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CVO_03165 (ligA)
03410 Base excision repair
CVO_03165 (ligA)
03420 Nucleotide excision repair
CVO_03165 (ligA)
03430 Mismatch repair
CVO_03165 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sulc03032
]
CVO_03165 (ligA)
03400 DNA repair and recombination proteins [BR:
sulc03400
]
CVO_03165 (ligA)
Enzymes [BR:
sulc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CVO_03165 (ligA)
DNA replication proteins [BR:
sulc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CVO_03165 (ligA)
DNA repair and recombination proteins [BR:
sulc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CVO_03165 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CVO_03165 (ligA)
MMR (mismatch excision repair)
DNA ligase
CVO_03165 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CVO_03165 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_5
HHH_2
PTCB-BRCT
DNA_ligase_ZBD
Nlig-Ia
BRCT_2
HHH
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
QHG90898
LinkDB
All DBs
Position
618721..620679
Genome browser
AA seq
652 aa
AA seq
DB search
MNLNDYKKAVEKLNLYAYHYYVLDDPITTDEVYDKLYHEVLEYEEHHKEDILPSSPTQRI
GDVVSEGFSKAHHLSRMWSLEDVFDSEGLQKWLTKTYKLDKNITFYCEPKYDGASLNLIY
EDGKLTQGITRGDGSVGELITQNVKTIRSIPLVINHKDRIEIRGEVVLYKDEFFRINQER
AAKGEAVFANPRNAAAGGLRQLDSSITASRNLVFLPYGVGENTLEHKLLSQRMDYIYSLG
FKKPPLRATCKNFDEIEAVYEEMNKNRDSYAMMLDGMVIKVNEIAAQIDMGYTVKNPRFS
VAYKFPAVEKITTLKEIALQVGRTGVVTPVAIVEPTNIDGVVVERATLHNFDEIDRKDIR
INDKVIILRSGDVIPKIIKVLTHERDGSEIKYERPTTCPVCGSELLDEGVLLKCQNLKCE
ARVINSIIYFASKPCLNIDGLGSKIVEALFNSGLVKSVLDLFDLTLNKLLTLEGFKEKKA
QNLLDSLEAAKGCDYWRFVNSLGIEHIGEVASKTLSSRFGSSFIDATKEELVSLEGFGEE
MTESVLEFVRVNRDTILKLQEILRPLEPKQREEAKENPFKGKSVVLTGSMSESRDATKEM
LEALGAKVVSSVSKKTDFVIYGEDAGSKYDKAVNLGVAVLSEQEMRKKIEQT
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgaatttaaatgattataaaaaagctgtagagaagctaaatctatacgcataccactat
tatgttcttgatgatccgattacgactgatgaggtgtacgataaactctatcatgaggtc
ttggaatacgaagagcatcacaaagaggatattttgccctcttcacctacacaaagaata
ggtgatgtagtctctgaaggattttcaaaagctcatcatcttagccgtatgtggagttta
gaggatgtttttgactctgagggtttgcaaaagtggcttacaaaaacatacaagttagat
aaaaacataacattttactgcgaaccgaagtatgacggagcaagcttgaatcttatctat
gaagatgggaaacttactcaaggtataacccgcggagacggaagtgtaggcgaactgata
acgcaaaatgtgaaaacaatccgctcgattccattggttataaatcataaagatagaatt
gagattagaggtgaagttgtactctataaagatgaattttttagaataaatcaagagaga
gcagcaaaaggcgaagcggtttttgcaaaccccagaaatgccgcggcaggaggtctaaga
cagcttgactcaagcattaccgcttcaagaaatcttgtctttttgccttacggtgtcgga
gagaacactctggagcataaacttttaagtcaaagaatggattatatctactctcttggt
tttaaaaaaccgccgcttcgagctacatgtaaaaattttgatgagatagaagctgtatat
gaagagatgaacaaaaatcgcgacagctacgcgatgatgcttgatggcatggttataaaa
gtaaatgaaatagctgcgcagatagatatgggttacaccgttaaaaacccccgtttttca
gttgcttacaaatttcctgcagttgagaagataaccacgctaaaagagatagctcttcaa
gtgggacgaacgggtgtggttactccggttgctattgtagagccgacaaatattgatggc
gttgtagttgagcgtgcgacactgcacaattttgatgagattgatagaaaagatatccgc
ataaatgacaaggtcatcatccttagaagtggtgatgttataccaaaaatcataaaagtt
ttaactcatgagagagatggaagtgaaattaaatatgagcgaccgacaacttgcccggtt
tgtggcagtgagcttttggatgagggtgtgcttctaaagtgtcaaaatctaaaatgtgaa
gctagagttatcaactccatcatctattttgcctcaaaaccgtgtctaaatattgacggc
ttgggctctaaaatagtagaggcactttttaattcagggcttgttaaaagtgttcttgat
ttgtttgatttaaccttaaataaactcttaactttagagggtttcaaagagaaaaaggcg
caaaatctgcttgattcgcttgaagccgcaaaagggtgtgattactggcggtttgtaaac
tctttggggattgagcatatcggagaggtggcgtctaaaactctaagtagcaggtttgga
agttcttttatagatgccacaaaagaggaactagtctcgttagagggttttggagaggag
atgacggagtcggttttggagtttgtcagagtaaacagagatactatattaaaactccaa
gagattttgcgtccgcttgaaccaaagcagagagaagaggcaaaagagaatccgtttaaa
ggtaaaagtgtagtgcttacgggaagcatgagcgagtcaagagacgctacaaaagagatg
ctggaagctttgggtgcaaaagtggtaagttcagtctccaaaaaaactgattttgttatc
tatggcgaagatgcaggaagcaaatatgataaagctgtgaacttgggcgttgctgttctt
agtgagcaagagatgaggaaaaaaattgagcagacttga
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